Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03517 ATGGCTTCCAGCAGTATCACTCCCAAGACATTGCTGCAAAGAAAATATGACGTTTTCGTTAGCTTCAATGGTGAAGACACACGCCTTAGTTTCACAGATCATCTTTTCGGTGCACTCCGAAGAAAAAGCATTGCTGCATTCAGGGATGATACACATATCAACAGAGGTGAATCCATAGCACCCGAGCTCTTCCGAGCAATTGAATCCTCTCAGATTTTCATTGTGGTTTTCTCTAAGAACTACGCTTCCTCAACTTGGTGCTTGCGAGAATTGGAACACATTCTTCTTCACTGCGGTCAACCATCAGAAAAACGTGTTCTCCCTGTTTTCTACGGTGTCAGACCTTTTGAGGTGCGAAGGCAAAGTAGGAGTTATCAAAACGCCTTTACTCGACATGAACAAACATTCCGTCATCACCCCGAGAAAGTTCAACGGTGGAGGGAAGCTCTCACCCAAGCAGCCAATATCTCTGGATGGGATCTACATGATAAGCCACAATATGCAGAGATTGAAATTATTGTTCAAGATATAATAGATACGTTTGGTTACAAATTTTCATATCTTCCAAATGATTTAGTTGGAATGCTTTCTCCTATAGAGGAATTGGAAAAATGTTTACTTTTGGACTCAGTTGATGATGTTCGGGCTGTTGGAATTTGTGGGATGGGCGGAGTAGGGAAGACAACTCTTGCTTCTGTTTTATATGGCAAAATGAAAGTCTCTAATCACTTCGAAGTGTGCTGTCTTATTGACGATGTAAGTAACATTTTTCGAAAAGACGGTCCAATTGGGGTACTCAAGCAAATTCTACATCAAATTCTAGGCGGAGAACACCGTGAGATATACAATCTTTATGATGCAACTAATTTGATACAGTGTAGACTATGTCGTTGTAGGGTTCTATTAGTTTTTGATAATGTTGATCATAGGGAACAATTGGAGAAACTTGCTGTGAATCGTAAATCGTTAGTTGCAGGGAGTAGAATCATTGTAGTTTGTAGAGATGCTCATATCTTGGAAGAGTATGGAGTGGATGCACTTTACAAAGTTCCACTCTTAAATCAGACAAACTCTCGTCAATTATTTTATCGAAAAGCCTTCAAATGTGATAATATTATGAGTGATACCTATAAGGAGTTGGAAAATGACATAATAAATTATGCTGATGGCCTTCCACTAGTGATTAAAGTATTAGGTTCATTTTTGTTTGGCCGAAGTATCTCTGAATGGAAAAGTGCTTTGGCTAGATTGCGAGAAAGTCCAAACAAAGTTATTATGGATGCGCTGCAGTTTAGTTTATACGGGCTAGAGAAAATGGAATTACAAATATTTCTTGACATTGCTTGTTTTTTCAACGGGCGTGAGGAAAAATTTGTTAAACATGTTTTAAATTGTTGTGGATGTCATCCTGACATTGGATTAAGAGTTCTTGTCGATAAATCACTTATAAGCATTTCAGCTGAAAGAAAGATTGAAATGCATGCTATGTTGGAAGGGCTAGGTAGAAAACTTGTTCAACTACATTCAACTGAAGAAACAAGAAAATGGAGTAGATTGTGGGTCCATAAAGATTGCTACGATGTTATGTCAGAGAATATGGAAAAGAATGTTGATGCCATAGTTTTGAATGGAAATGAAAGCGATACAGAAGTATTGATGGCTGATTCATTGTCAAACATGAGTCGTCTTAGATTGCTCATACTTATGGGTGTTAAAGTTTTAGGAAGCCTCAACAATCTTTCTAATCAATTAAGGTATGTTGAATGGACGAGCTATCCTTTCATGTATTTGCCATCAAGTTTTCAGCCCAATCAACTTGTTGAGTTGATATTGAAGTATAGCAGCATCAAACAACTCTGGGAAGGCAAGAAGAATCTGCCCAATTTGAGGACTCTGGATTTAAGCTACTCTGAAAATTTAATCAAGATGCAAGATTTTGGACATGTCACGAATCTTGAACGGCTAAACCTTGAAGGGTGTGTAAAGCTTGTGGAGTTAGATCCATCAATTGGTCTTGCGAAGAAGCTTGTTTTCTTGAATTTGAAAAATTGCACAAGTCTTATATGCATACCTAACTGCATATATCATCTCAACTCTCTTGAATATTTAAATCATTGCAGTTGTTCCGAAGCGTTTAACAATCCATGCCATTTAGAATTGCTTTCCTTGGCCAGCTTACATGCTTTGTGCGAACTTGATATTAGTTTTTGTGGTCTAAGCCAACTCCCAGCAGATACTATTGGAGGTCTGCATTGTTTACAAATATTAAATTTAGGGGGAAACAATTTTGTGACACTACCTAGTCTCGCACAGCTTTCCGAACTTGCATATTTGAATTTGGAGCATTGCATGCTGTTGAAATCTTTTCCCGAGCTTCCTTCACCTACTGCTATCAAGCCCAGCAAATATTGGAGAGCAGGGATGTATATTTTCAACTGTCCTGAATTGGTTGACAGGCAAAGTTGCAGTAGCATGACTTTTTCATGGATGATGCAATTCGTTCTAGCAAACCAAGAATCCTCTTCCTCCTTTCATTGGATGGAAATTGTTATTCCCGGCAGTGATATTCAAAGCTTGTTTAACAATCAGAAGGTGGGCAGATCAGTGACAATAAACCCATACCATATTATGGAAGACAGTAATGTCATTGGAGTTGTTTGTTGTGTAGTATTTTCTGTGGCGCGTCGTGAACCAACTACAACTGCAAATGGACAGAAACCTGTCTTATATCTAAGCTTTCGTAGAGATGACAAAAAGGTTCATTTTAGCATTCTACTTGATACAACTCTTGTTATGGACCAATCGAGTCACATGTGGTTAACCTATTTCACTAAGGAATCATTCTTTAATATTCTGAAAGATATAGACAATAAAGATGGCAATTCTATGAGAATAGAAGCTTTCATTGTAGACAAAGGTTTGGGTGTGAAGGTGAACAGGTGCGGGTATTGTTGGGTAGATAAACAATATCCACTACCGTTAAATTAA 2988 0.3812 MASSSITPKTLLQRKYDVFVSFNGEDTRLSFTDHLFGALRRKSIAAFRDDTHINRGESIAPELFRAIESSQIFIVVFSKNYASSTWCLRELEHILLHCGQPSEKRVLPVFYGVRPFEVRRQSRSYQNAFTRHEQTFRHHPEKVQRWREALTQAANISGWDLHDKPQYAEIEIIVQDIIDTFGYKFSYLPNDLVGMLSPIEELEKCLLLDSVDDVRAVGICGMGGVGKTTLASVLYGKMKVSNHFEVCCLIDDVSNIFRKDGPIGVLKQILHQILGGEHREIYNLYDATNLIQCRLCRCRVLLVFDNVDHREQLEKLAVNRKSLVAGSRIIVVCRDAHILEEYGVDALYKVPLLNQTNSRQLFYRKAFKCDNIMSDTYKELENDIINYADGLPLVIKVLGSFLFGRSISEWKSALARLRESPNKVIMDALQFSLYGLEKMELQIFLDIACFFNGREEKFVKHVLNCCGCHPDIGLRVLVDKSLISISAERKIEMHAMLEGLGRKLVQLHSTEETRKWSRLWVHKDCYDVMSENMEKNVDAIVLNGNESDTEVLMADSLSNMSRLRLLILMGVKVLGSLNNLSNQLRYVEWTSYPFMYLPSSFQPNQLVELILKYSSIKQLWEGKKNLPNLRTLDLSYSENLIKMQDFGHVTNLERLNLEGCVKLVELDPSIGLAKKLVFLNLKNCTSLICIPNCIYHLNSLEYLNHCSCSEAFNNPCHLELLSLASLHALCELDISFCGLSQLPADTIGGLHCLQILNLGGNNFVTLPSLAQLSELAYLNLEHCMLLKSFPELPSPTAIKPSKYWRAGMYIFNCPELVDRQSCSSMTFSWMMQFVLANQESSSSFHWMEIVIPGSDIQSLFNNQKVGRSVTINPYHIMEDSNVIGVVCCVVFSVARREPTTTANGQKPVLYLSFRRDDKKVHFSILLDTTLVMDQSSHMWLTYFTKESFFNILKDIDNKDGNSMRIEAFIVDKGLGVKVNRCGYCWVDKQYPLPLN 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03517 995 SMART till_3 15 156 IPR000157 GO:0007165
Vivi5g03517 995 Pfam NB-ARC domain 210 423 IPR002182 GO:0043531
Vivi5g03517 995 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 818 IPR044974 GO:0006952
Vivi5g03517 995 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 159 IPR035897 -
Vivi5g03517 995 ProSiteProfiles Leucine-rich repeat profile. 752 773 IPR001611 GO:0005515
Vivi5g03517 995 ProSiteProfiles TIR domain profile. 14 181 IPR000157 GO:0007165
Vivi5g03517 995 Gene3D Ribonuclease Inhibitor 507 722 IPR032675 -
Vivi5g03517 995 Pfam Leucine rich repeat 729 785 IPR001611 GO:0005515
Vivi5g03517 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 447 IPR027417 -
Vivi5g03517 995 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 182 - -
Vivi5g03517 995 Gene3D - 13 183 IPR035897 -
Vivi5g03517 995 Gene3D Ribonuclease Inhibitor 723 802 IPR032675 -
Vivi5g03517 995 Gene3D - 184 346 IPR027417 -
Vivi5g03517 995 SUPERFAMILY L domain-like 549 794 - -
Vivi5g03517 995 Pfam TIR domain 15 161 IPR000157 GO:0007165
Vivi5g03517 995 Pfam Leucine Rich Repeat 605 624 IPR011713 -
Vivi5g03517 995 PRINTS Disease resistance protein signature 624 640 - -
Vivi5g03517 995 PRINTS Disease resistance protein signature 294 308 - -
Vivi5g03517 995 PRINTS Disease resistance protein signature 216 231 - -
Vivi5g03517 995 PRINTS Disease resistance protein signature 388 402 - -
Vivi5g03517 995 SUPERFAMILY "Winged helix" DNA-binding domain 425 529 IPR036390 -
Vivi5g03517 995 Gene3D - 352 437 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03517 Vivi-Chr5 127372249 127375812 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03517 8 791 WRKY Transcription Factor Family AT4G12020 30.370 2.55e-80 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03517 - - cam:101502375 1436.78