Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03516 ATGGTTAGCAGTAGTAGCAGAAACTCCTCAACTTCACCTACGGTGACATCATATGCCAGAAGAAATTCTAACTATGATGTGTTTGTGAGCTTCCGAGGTGAAGACACTCGCTACAATTTCACCGATTTTCTTTTCGACGCCTTTCAAACAAAAGGCATTTTTGCGTTTAGGGATGACAATAATCTTCCAAAAGGTGAATCTATTAGACCCGAGCTCCTTTATGCAATCCAACACTCTCAGATTTATGTTGTCGTCTTCTCAAGGAACTATGCTTCCTCAATTTGGTGCTTGCAAGAACTAGTAAAGATATGTGAATGCGTTCAAATGTATGGAAAACATGTTCTTCCTGTTTTCTATGATGTTGATCCTTCTGACGTCAGACATCAAAAAGGAATTTATGCTGAGGCATTCGCCAAACATGAACAAAGATTCCAACATGACTCTCAGATGGTGCCAAGATGGAGGAAAGCTCTAACACAGGTTGCAAATCTCGCTGGATGGGATCTGCGTCATAAGCCACAATCTACAATCTGCAAAAAGATTGTTCAAAAGACAATAAGTATATTGGATTGCATATCTTCATCTATTTCAAAAGATTTAGTTGGTATGGATTCTCATATTCAAGAATTAGAAAAGCTTTTACTTTTGAAATCGGTTGATGATGTTCGTGTGGTAGGAATTTGCGGGAAGGGAGGAATAGGGAAGACAACTCTTGCTACTGTTTTATATGATCAAATCTCTCAACAATTTGGTGCATGTTGTTTTATTGATGATGTAAGCAAAATATATAGACTACATGGTCCACTCGGTTTACAAAAGGAAATTCTAGATCAAACTCTCGGTCAAAAGCATCATCAGATATGCAATCAATACAACGCAGCTAATCTGATACGACGTAGGCTATGTCGTCAAAAGGCCCTTATGATTCTTGATAATGTTGATCACATTGAACAACTGGAAAAAATAACCGTGCATCGCGAATGGTTTAGTGCCGGTAGTAGAATCATTATCATTTCTAGAGATGAGCATATATTGAGTCAGTATGGGGTGGATGCAGTTTACCAAGTTCCTCTCTTGAGTTGGACTAACTCTCGTAAATTATTGTGTCGAAAAGCTTTCAAACCCGATCACATTTCAAATAGTTATAAAGGATTGGTTAATGGCATACTAAATTATGTCAATGGCCTACCACTAGCAATTAAAGTACTGGGTTCATTTTTGTTTGGCCGAGATATATCCGAATGGAAAAGTACATTGGCTAGTTTGAGAGAAAATCCAGACAAAGGTATCATGAATGTGCTGCGATTAAGTTTTGATGGGCTAAGGGAGACAGAAAAAGAAATATTTCTTCATATTGCTTGTTTTTTCGACACGGATATGAAGAAATATGTTAAAAATGTTTTAAATTGTTGTGGATTTCATGTTGATATTGGATTAAAGGTTCTCATTGAAAAATCCCTCGTAAGCATTGAAGATGAAAAGATTGTAATGCACGATTTGTTGGAAGAGCTAGGCAGAAAAATTGTTGCAGAAAACACAATCAAAGAGCCCACAAAGTGGAGAAGGTTGTGGTTCGACAAACAATTGTTGGATGTTACGTTGGAAAATATGGAAAAGAATGTTGAAGCTATAGTTTTGGATCATTATCATGAAGATTATAGTCACGTTGATGAAGATATCAATGCGCCTCAAATTATCACTGTGATTCTGAAAGTTCACATGCATTGTGAAGCTTGTTCACAAGAAATCAAAAAACGGATCGAGAGAATCAAAGGAGTGGTATCAGCAGAACCGGATCGGAACAAGTCACTAGTGACAGTGAAAGGAGTATTTGAAAGTGATAAATTAGTTGAATATGTTTACAAGAGAACCAGAAAACAAGCTGTGATTGTGAAACAAGAGCCGGAGAAGAAAGAAGAAGCAAAAGAAATTAAGGAAGAAAAGAAGAAAACTGAGGAGAAGGACAAGAATGAGAAAGGAAGTGGTGAAGGAGAAATTAAGGAAGAAAATAAGAAAACTGAGGAGAAGGACAAGAATGAGATAGGAAGTGGTGAAGGAGAGGAAAAGAAAGAAGTTGCAACGGGAGTTGAAAAAATAGATGGCGGCCGCGATGGTGGTGATGGAGAGGAAAAGAAAGTTGCATCGGGAGTTGAAAAACCAGATGGCGGCGGTGGTGGTGATGGAGAGGAAAAGAAAGAAGTTGCACCGGGAGTTAAAAAATCAGATGGCGGCGACGGTGGTGGTGGTGGTGCAGAAGAAACCACGGCGGTGGAAACGAAGAAAAATGAGTATTATTATAATCCACCAAGGTATGGTATGGAGTTTTATGCTTATCCTGCACGAGGGTCACAGATTTTTAGTGATGAGAACCCCAATGCTTGTTCTGTAATGTAG 2394 0.3843 MVSSSSRNSSTSPTVTSYARRNSNYDVFVSFRGEDTRYNFTDFLFDAFQTKGIFAFRDDNNLPKGESIRPELLYAIQHSQIYVVVFSRNYASSIWCLQELVKICECVQMYGKHVLPVFYDVDPSDVRHQKGIYAEAFAKHEQRFQHDSQMVPRWRKALTQVANLAGWDLRHKPQSTICKKIVQKTISILDCISSSISKDLVGMDSHIQELEKLLLLKSVDDVRVVGICGKGGIGKTTLATVLYDQISQQFGACCFIDDVSKIYRLHGPLGLQKEILDQTLGQKHHQICNQYNAANLIRRRLCRQKALMILDNVDHIEQLEKITVHREWFSAGSRIIIISRDEHILSQYGVDAVYQVPLLSWTNSRKLLCRKAFKPDHISNSYKGLVNGILNYVNGLPLAIKVLGSFLFGRDISEWKSTLASLRENPDKGIMNVLRLSFDGLRETEKEIFLHIACFFDTDMKKYVKNVLNCCGFHVDIGLKVLIEKSLVSIEDEKIVMHDLLEELGRKIVAENTIKEPTKWRRLWFDKQLLDVTLENMEKNVEAIVLDHYHEDYSHVDEDINAPQIITVILKVHMHCEACSQEIKKRIERIKGVVSAEPDRNKSLVTVKGVFESDKLVEYVYKRTRKQAVIVKQEPEKKEEAKEIKEEKKKTEEKDKNEKGSGEGEIKEENKKTEEKDKNEIGSGEGEEKKEVATGVEKIDGGRDGGDGEEKKVASGVEKPDGGGGGDGEEKKEVAPGVKKSDGGDGGGGGAEETTAVETKKNEYYYNPPRYGMEFYAYPARGSQIFSDENPNACSVM 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03516 797 Gene3D - 562 631 - -
Vivi5g03516 797 Coils Coil 634 658 - -
Vivi5g03516 797 Pfam NB-ARC domain 206 426 IPR002182 GO:0043531
Vivi5g03516 797 SUPERFAMILY "Winged helix" DNA-binding domain 430 530 IPR036390 -
Vivi5g03516 797 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 167 IPR035897 -
Vivi5g03516 797 CDD HMA 570 628 IPR006121 GO:0046872
Vivi5g03516 797 MobiDBLite consensus disorder prediction 633 739 - -
Vivi5g03516 797 Gene3D - 195 353 IPR027417 -
Vivi5g03516 797 ProSiteProfiles Heavy-metal-associated domain profile. 565 629 IPR006121 GO:0046872
Vivi5g03516 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 452 IPR027417 -
Vivi5g03516 797 Pfam Heavy-metal-associated domain 571 618 IPR006121 GO:0046872
Vivi5g03516 797 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 579 IPR044974 GO:0006952
Vivi5g03516 797 Gene3D - 359 442 IPR042197 -
Vivi5g03516 797 SUPERFAMILY HMA, heavy metal-associated domain 567 623 IPR036163 GO:0046872
Vivi5g03516 797 Gene3D - 19 194 IPR035897 -
Vivi5g03516 797 PRINTS Disease resistance protein signature 393 407 - -
Vivi5g03516 797 PRINTS Disease resistance protein signature 300 314 - -
Vivi5g03516 797 PRINTS Disease resistance protein signature 224 239 - -
Vivi5g03516 797 ProSiteProfiles TIR domain profile. 23 189 IPR000157 GO:0007165
Vivi5g03516 797 MobiDBLite consensus disorder prediction 633 762 - -
Vivi5g03516 797 SMART till_3 24 164 IPR000157 GO:0007165
Vivi5g03516 797 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 191 - -
Vivi5g03516 797 Pfam TIR domain 24 193 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03516 Vivi-Chr5 127361526 127365271 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03516 18 547 WRKY Transcription Factor Family AT4G12020 27.087 6.55e-51 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03516 - - vvo:131602422 1460.28