Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03504 ATGGATACTCAAGTCAAGTATGCTAAGGTTGAGACAATTGTTGGGCGCACTGGTTCAAGAGGACAGGTGACTCAAGTTAGAGTGAGTTTTCTGGATGACCCGACCCGTCGCATCATGAGGAATGTGAAAGGACCAGTCAGAGTGAATGATGTCCTCACTCTACTGGAGTCTGAAAGAGAAGCAAGGAGGTTGCGGTAG 198 0.4798 MDTQVKYAKVETIVGRTGSRGQVTQVRVSFLDDPTRRIMRNVKGPVRVNDVLTLLESEREARRLR 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03504 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Vivi5g03504 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vivi5g03504 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vivi5g03504 65 SUPERFAMILY Nucleic acid-binding proteins 2 65 IPR012340 -
Vivi5g03504 65 Pfam Ribosomal protein S28e 4 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vivi5g03504 65 Gene3D - 1 65 IPR012340 -
Vivi5g03504 65 CDD S1_S28E 6 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Vivi5g03504 65 FunFam 40S ribosomal protein S28 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03504 Vivi-Chr5 127215647 127216555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03504 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G64140 75.385 3.30e-27 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03504 K02979 - pop:7488050 79.3369