Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03499 ATGTTTGGTTTTGGCAGAATTGTTTCTAATGCTGCTGTATGTCTTCGTGAAAACTTAACATTTCGCAGTGTGCAAGTACGAAATATAAACATTGGAGGTGGTCTTGGAGGTGAGATTCCAGATAGCAAGCGTCTTCAGTATGCTCTTCAGCATATCCACGGGATTGGCCGTGCAAAAGCTCATCACATTGTGTGTGAGCTTGGAGTTGAGAACAAATATGTCAAGGACCTAAGCAAAAGAGAACTATACTCTCTTCGTGAATTGCTGGCCAAGTACTTGATTGGAAATGATTTGAAAAAGTTAGTTGAGAGAGATGTGGGAAGGTTGGTTGGTATTCAATGCTATAGGGGGATTAGGCATGCCGATGGTTTACCCTGTCGTGGACAGCGAACTCATACAAATTCCCGCACTAGGAGGACTATGCGTACTTACGGAGGTTCAAGATAA 447 0.4295 MFGFGRIVSNAAVCLRENLTFRSVQVRNINIGGGLGGEIPDSKRLQYALQHIHGIGRAKAHHIVCELGVENKYVKDLSKRELYSLRELLAKYLIGNDLKKLVERDVGRLVGIQCYRGIRHADGLPCRGQRTHTNSRTRRTMRTYGGSR 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03499 148 FunFam 30S ribosomal protein S13 35 100 - -
Vivi5g03499 148 ProSitePatterns Ribosomal protein S13 signature. 116 129 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vivi5g03499 148 Gene3D - 35 100 - -
Vivi5g03499 148 Pfam Ribosomal protein S13/S18 36 137 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vivi5g03499 148 Gene3D 30s ribosomal protein s13, domain 2 102 144 IPR027437 -
Vivi5g03499 148 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 30 140 - -
Vivi5g03499 148 SUPERFAMILY S13-like H2TH domain 36 142 IPR010979 GO:0003676
Vivi5g03499 148 ProSiteProfiles Ribosomal protein S13 family profile. 35 140 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vivi5g03499 148 Hamap 30S ribosomal protein S13 [rpsM]. 25 147 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03499 35 141 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 29.008 2.39e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03499 K02952 - gmx:100527465 226.483