Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03483 ATGTTTGTTTTAGCTTTTACAGCTGCAATGACAATGACTTGCAATAGTTCAACTAAGATGAGATGGAAATATGATGTGTTTGTGAGCTTCAGAGGTGAAGACACGCGCAACAATTTCACTGATCACCTCTTTGGCACTCTTCATAAAAAAGGCATTGTTGTCTTCAGAGATGATACAGAGCTCAAGAAAGGGGAACATATATCATTTGAGCTTTTACAAGCTATTGAAGCATCCCGTGTTTTGATTGTAATCTTCTCAACAAACTACGCTTCTTCCTCATGGTGCTTGCAAGAACTCGCTAAAATTGCTGACTGCATCCATGTTCCTGGACAATCTGTTCTACCTATTTTCTATGATGTCAGTCCTTCTGAGGTACGGAAACAAAGCGGAGATTATGAAAAAGCCTTTCAGGTGCAGGAAGAAAGATTCAATGAAAATTTAGAGGAAATGCAAAGATGGAGGGGAGCCTTAACACAAGTAGCCAATCTCTCTGGTTGGGATGTAAGGGATAAGCCACAATATGCAGAGATTGGAAAAATTATTAATGAGGTAACATGCTTATTGGGAAGCAAATCTTTAAATTTACCTAGGGATTTAGTTGGGATGCACTCAAGAGTGGAAGAATTAGAAAACCTTCTGATTTTGGACTCAGATGATGATGATGATGTTCGAGTTGTAGGGATTTCTGGAATGGGTGGAATAGGGAAGACAACTCTTGCTACTGCTTTGTATGCTAGAATCTCTAATCAATTTGATGCTTGCTGCTTTATTGATGATGTAAGTAAAATTTATGGAGATCATGGCCCAATTGGAGTACAGAAGCAACTTCTTTGTCAAACTCTAAATGAAGAAAATCTTCAGATATGCAATCTTTCTATGGCTTCTAATTTGATTCGAACGAGGCTATGTCGAATAAAATCCCTTGTTGTTCTTGATAACGTGGATGAAGTTGAACAACTGGATAAATTGGATATGAAACGAGAATGGTTAGGCACGGGGAGTAGAATAATCATAATTTCTAGAAATGGGCACATCTTGAGAGAGCATGGAGCAGATGAAGTATACAAAGTTCGACTCTTGGATCGTAAATGCGCCCTTCAACTGTTTTGTAGGAAAGCTTTCAAAAGTGATGATATCATGAGCGGTTACATATACTTGACATATGAAGTACTAGCGTATGCCAATGGCCTTCCCCTAGCAATTCAAGTGTTGGGCTCATTTCTGTATGGTCGAGATGCCTCTGAGTGGAGAAGTGCACTGTCAAGATTAAGAGAGAACCCAATGACAAGTATTATGAATGTACTCCGAATTAGTTTTGATGGACTTGAGGATACGGAAAAAGAAATATTTCTTGATATTGCTTGTTTCTTTTATAGAGACACTGAGAGATACGTGAAGAAAATTTTAAATTTTCGTGGATTTCATCCTGAAATTGGTTTAAGAGTTCTTATTGATAAATCATTCATAACTTGTGAGAATCAGATAATTTGTATGCATGATTTGTTTAGAGAATTGGGGAAGAGTATCGTTAAAGAAAAATCACCCAAAGAACCAAGAAAGTGGAACAGGTTGTGGGACTACAAGGATGTCCATAATGTTATCTCAGAAAACATGGCAACAGAAAACCTTGAAGCCATAGTTATGCAGTATCATCCAGCAAATGATAGAGAAATACAAAAGATGACAACATTGAGGGCCGATGCTTTAGCACAAATGAGTCGCCTTAAATTGCTCAAGCTGGTGATGTTTAATTTCTCGGGAAGTCTCAATTTTCTTTCAAGTGAATTGGGCTATTTATATTGGGATAAATATCCTTTTGCTAGTTTGCCATCAAGTTTTCAGCCGAATAAACTTGTTGAACTGATCCTTAAACACAGCAACATCAAGAAACTATGGGAGGGCACAAAGTGTCTACCTAATTTGACACATATTGATCTCTCTGACTCAAAAAATCTTATTATGATGCCAAATTTTGAGGAGATTCCAAATCTTGAGAGCCTAAATCTTGAAGGATGTATAAAACTCGTGAAGATTGATCCATCCATCGGTACCTTGAGAATGCTTTCCAGATTAAATTTGAAAAATTGTACAAATTTGGTCAGTATTCCTAACAACATTTTTGGTCTGAATTCTCTCAAACATTTAATTCTCTCAGGCTGTCCAAATTTATTTAATAATCTGTTAGAAATACAAAGCCAAATAGAACATCCGGAGAAGCTTGATAACAAGGAAAGTACTACCCAATACCAACTAACATCCTTCATCTACAAATTTCTAAAGCCACACTTTCAATTTCTGATATTTCGAAAACCTGAAGAGTCAGTTGGTTTATTGTTGCCTTCATTGTCTCATTTGTCATGTTTGCAATATCTTGACCTGAGTTTCTGCAATCTTCTTAAAATCCCTAATGCAATCGGGTTGTTACATTGCTTAGAAACCCTTTATTTGGGGGGTAACAATTTTGTGACACTACCTTCTAGCATGAAAGAACTTTCCAAACTTAGAGAATTAAACTTGCAGCACTGTAAGTACCTGAAATATTTGCCCGAGCTCCCATCAAAAGCTGTTCTGCCAATAAGAAAAACATTTTTTGGTAGATATTCAGCTGGTTTATATATATTTGACTGCCCTGGTTTGATTGAGATGGAAAGCTGTTATGGAATTGCTTTTTCTTGGATGATACTACTCCTTCAGGTTCACCTGCAATCAGACATCCCAATAAGTCATATGAATATTGTTATTCCGAAAACTCAAATTCCAAGGTGGTTCAACAAACAAAATGTAGGTAGTTCAATAAGTATCGATCCATCATCCATTATGCATGACAAGAATTGGATAGGCGTTGCTTGCTGCTTAACATTTGTAGCACATGATAATCCGACTAATTTAAGTGATGAACTGTCACCTAATATTGCGTTTGGTTTTCAATGTAAACGGCGTGGGATCTATCCAATTATTCCCATACGTCTTGGAAAAGAGCTGGTCACAGTTGATTTAGATCACTTGTTGCTAATTTTTTTCAGTAGGGAGGAATTTATTGGTATGATAAGTGATATAACAGAGGGATTGGATGATATTAGTGGAATTGAATTGAAAGCTATAGTTGATCAGCCCCTTGGTATGCACTTGGAGGTAAAAAATTGTGGTTATCGTTGGATATTTAAGGAGGATCTGGAACAATTAAACCCGCAAATGATGTACAGCGGAAATTCGTCTGTTCAGCCATATTATTGA 3234 0.3689 MFVLAFTAAMTMTCNSSTKMRWKYDVFVSFRGEDTRNNFTDHLFGTLHKKGIVVFRDDTELKKGEHISFELLQAIEASRVLIVIFSTNYASSSWCLQELAKIADCIHVPGQSVLPIFYDVSPSEVRKQSGDYEKAFQVQEERFNENLEEMQRWRGALTQVANLSGWDVRDKPQYAEIGKIINEVTCLLGSKSLNLPRDLVGMHSRVEELENLLILDSDDDDDVRVVGISGMGGIGKTTLATALYARISNQFDACCFIDDVSKIYGDHGPIGVQKQLLCQTLNEENLQICNLSMASNLIRTRLCRIKSLVVLDNVDEVEQLDKLDMKREWLGTGSRIIIISRNGHILREHGADEVYKVRLLDRKCALQLFCRKAFKSDDIMSGYIYLTYEVLAYANGLPLAIQVLGSFLYGRDASEWRSALSRLRENPMTSIMNVLRISFDGLEDTEKEIFLDIACFFYRDTERYVKKILNFRGFHPEIGLRVLIDKSFITCENQIICMHDLFRELGKSIVKEKSPKEPRKWNRLWDYKDVHNVISENMATENLEAIVMQYHPANDREIQKMTTLRADALAQMSRLKLLKLVMFNFSGSLNFLSSELGYLYWDKYPFASLPSSFQPNKLVELILKHSNIKKLWEGTKCLPNLTHIDLSDSKNLIMMPNFEEIPNLESLNLEGCIKLVKIDPSIGTLRMLSRLNLKNCTNLVSIPNNIFGLNSLKHLILSGCPNLFNNLLEIQSQIEHPEKLDNKESTTQYQLTSFIYKFLKPHFQFLIFRKPEESVGLLLPSLSHLSCLQYLDLSFCNLLKIPNAIGLLHCLETLYLGGNNFVTLPSSMKELSKLRELNLQHCKYLKYLPELPSKAVLPIRKTFFGRYSAGLYIFDCPGLIEMESCYGIAFSWMILLLQVHLQSDIPISHMNIVIPKTQIPRWFNKQNVGSSISIDPSSIMHDKNWIGVACCLTFVAHDNPTNLSDELSPNIAFGFQCKRRGIYPIIPIRLGKELVTVDLDHLLLIFFSREEFIGMISDITEGLDDISGIELKAIVDQPLGMHLEVKNCGYRWIFKEDLEQLNPQMMYSGNSSVQPYY 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03483 1077 Gene3D Ribonuclease Inhibitor 771 892 IPR032675 -
Vivi5g03483 1077 Pfam Leucine Rich Repeat 617 636 IPR011713 -
Vivi5g03483 1077 Pfam NB-ARC domain 215 429 IPR002182 GO:0043531
Vivi5g03483 1077 Pfam C-JID domain 914 1059 IPR045344 -
Vivi5g03483 1077 Gene3D - 360 443 IPR042197 -
Vivi5g03483 1077 SMART till_3 23 163 IPR000157 GO:0007165
Vivi5g03483 1077 ProSiteProfiles Leucine-rich repeat profile. 787 808 IPR001611 GO:0005515
Vivi5g03483 1077 Gene3D - 192 356 IPR027417 -
Vivi5g03483 1077 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 723 IPR044974 GO:0006952
Vivi5g03483 1077 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 190 - -
Vivi5g03483 1077 Gene3D - 17 191 IPR035897 -
Vivi5g03483 1077 ProSiteProfiles TIR domain profile. 22 188 IPR000157 GO:0007165
Vivi5g03483 1077 SUPERFAMILY L domain-like 498 850 - -
Vivi5g03483 1077 PRINTS Disease resistance protein signature 394 408 - -
Vivi5g03483 1077 PRINTS Disease resistance protein signature 829 845 - -
Vivi5g03483 1077 PRINTS Disease resistance protein signature 225 240 - -
Vivi5g03483 1077 PRINTS Disease resistance protein signature 301 315 - -
Vivi5g03483 1077 Gene3D Ribonuclease Inhibitor 542 753 IPR032675 -
Vivi5g03483 1077 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 166 IPR035897 -
Vivi5g03483 1077 Pfam TIR domain 23 168 IPR000157 GO:0007165
Vivi5g03483 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 453 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03483 Vivi-Chr5 126795431 126799721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03483 24 814 WRKY Transcription Factor Family AT4G12020 31.153 5.01e-90 316