Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03482 ATGACAATGACTTGCAATAGTTCAACTAAGATGAGATGGAAATATGATGTGTTTGTGAGCTTCAGAGGTGAAGACACGCGCAACAATTTCACTGATCACCTCTTTGGCACTCTTCATAAAAAAGGCATTGTTGTCTTCAGAGATGATACAGAGCTCAAGAAAGGGGAACATATATCATTTGAGCTTTTACAAGCTATTGAAGCATCCCGTGTTTTGATTGTAATCTTCTCAACAAACTACGCTTCTTCCTCATGGTGCTTGCAAGAACTCGCTAAAATTGCTGACTGCATCCATGTTCCTGGACAATCTGTTCTACCTATTTTCTATGATGTCAGTCCTTCTGAGGTACGGAAACAAAGCGGAGATTATGAAAAAGCCTTTCAGGTGCAGGAAGAAAGATTCAATGAAAATTTAGAGGAAATGCAAAGATGGAGGGGAGCCTTAACACAAGTAGCCAATCTCTCTGGTTGGGATGTAAGGGATAAGCCACAATATGCAGAGATTGGAAAAATTATTAATGAGGTAACATGCTTATTGGGAAGCAAATCTTTAAATTTACCTAGGGATTTAGTTGGGATGCACTCAAGAGTGGAAGAATTAGAAAACCTTCTGATTTTGGACTCAGATGATGATGATGATGTTCGAGTTGTAGGGATTTCTGGAATGGGTGGAATAGGGAAGACAACTCTTGCTACTGCTTTGTATGCTAGAATCTCTAATCAATTTGATGCTTGCTGCTTTATTGATGATGTAAGTAAAATTTATGGAGATCATGGCCCAATTGGAGTACAGAAGCAACTTCTTTGTCAAACTCTAAATGAAGAAAATCTTCAGATATGCAATCTTTCTATGGCTTCTAATTTGATTCGAACGAGGCTATGTCGAATAAAATCCCTTGTTGTTCTTGATAACGTGGATGAAGTTGAACAACTGGATAAATTGGATATGAAACGAGAATGGTTAGGCACGGGGAGTAGAATAATCATAATTTCTAGAAATGGGCACATCTTGAGAGAGCATGGAGCAGATGAAGTATACAAAGTTCGACTCTTGGATCGTAAATGCGCCCTTCAACTGTTTTGTAGGAAAGCTTTCAAAAGTGATGATATCATGAGCGGTTACATATACTTGACATATGAAGTACTAGCGTATGCCAATGGCCTTCCCCTAGCAATTCAAGTGTTGGGCTCATTTCTGTATGGTCGAGATGCCTCTGAGTGGAGAAGTGCACTGTCAAGATTAAGAGAGAACCCAATGACAAGTATTATGAATGTACTCCGAATTAGTTTTGATGGACTTGAGGATACGGAAAAAGAAATATTTCTTGATATTGCTTGTTTCTTTTATAGAGACACTGAGAGATACGTGAAGAAAATTTTAAATTTTCGTGGATTTCATCCTGAAATTGGTTTAAGAGTTCTTATTGATAAATCATTCATAACTTGTGAGAATCAGATAATTTGTATGCATGATTTGTTTAGAGAATTGGGGAAGAGTATCGTTAAAGAAAAATCACCCAAAGAACCAAGAAAGTGGAACAGGTTGTGGGACTACAAGGATGTCCATAATGTTATCTCAGAAAACATGGCAACAGAAAACCTTGAAGCCATAGTTATGCAGTATCATCCAGCAAATGATAGAGAAATACAAAAGATGACAACATTGAGGGCCGATGCTTTAGCACAAATGAGTCGCCTTAAATTGCTCAAGCTGGTGATGTTTAATTTCTCGGGAAGTCTCAATTTTCTTTCAAGTGAATTGGGCTATTTATATTGGGATAAATATCCTTTTGCTAGTTTGCCATCAAGTTTTCAGCCGAATAAACTTGTTGAACTGATCCTTAAACACAGCAACATCAAGAAACTATGGGAGGGCACAAAGTGTCTACCTAATTTGACACATATTGATCTCTCTGACTCAAAAAATCTTATTATGATGCCAAATTTTGAGGAGATTCCAAATCTTGAGAGCCTAAATCTTGAAGGATGTATAAAACTCGTGAAGATTGATCCATCCATCGGTACCTTGAGAATGCTTTCCAGATTAAATTTGAAAAATTGTACAAATTTGGTCAGTATTCCTAACAACATTTTTGGTCTGAATTCTCTCAAACATTTAATTCTCTCAGGCTGTCCAAATTTATTTAATAATCTGTTAGAAATACAAAGCCAAATAGAACATCCGGAGAAGCTTGATAACAAGGAAAGTACTACCCAATACCAACTAACATCCTTCATCTACAAATTTCTAAAGCCACACTTTCAATTTCTGATATTTCGAAAACCTGAAGAGTCAGTTGGTTTATTGTTGCCTTCATTGTCTCATTTGTCATGTTTGCAATATCTTGACCTGAGTTTCTGCAATCTTCTTAAAATCCCTAATGCAATCGGGTTGTTACATTGCTTAGAAACCCTTTATTTGGGGGGTAACAATTTTGTGACACTACCTTCTAGCATGAAAGAACTTTCCAAACTTAGAGAATTAAACTTGCAGCACTGTAAGTACCTGAAATATTTGCCCGAGCTCCCATCAAAAGCTGTTCTGCCAATAAGAAAAACATTTTTTGGTAGATATTCAGCTGGTTTATATATATTTGACTGCCCTGGTTTGATTGAGATGGAAAGCTGTTATGGAATTGCTTTTTCTTGGATGATACTACTCCTTCAGGTTCACCTGCAATCAGACATCCCAATAAGTCATATGAATATTGTTATTCCGAAAACTCAAATTCCAAGGTGGTTCAACAAACAAAATGTAGGTAGTTCAATAAGTATCGATCCATCATCCATTATGCATGACAAGAATTGGATAGGCGTTGCTTGCTGCTTAACATTTGTAGCACATGATAATCCGACTAATTTAAGTGATGAACTGTCACCTAATATTGCGTTTGGTTTTCAATGTAAACGGCGTGGGATCTATCCAATTATTCCCATACGTCTTGGAAAAGAGCTGGTCACAGTTGATTTAGATCACTTGTTGCTAATTTTTTTCAGTAGGGAGGAATTTATTGGTATGATAAGTGATATAACAGAGGGATTGGATGATATTAGTGGAATTGAATTGAAAGCTATAGTTGATCAGCCCCTTGGTATGCACTTGGAGGTAAAAAATTGTGGTTATCGTTGGATATTTAAGGAGGATCTGGAACAATTAAACCCGCAAATGATGTACAGCGGAAATTCGTCTGTTCAGCCATATTATTGA 3207 0.3692 MTMTCNSSTKMRWKYDVFVSFRGEDTRNNFTDHLFGTLHKKGIVVFRDDTELKKGEHISFELLQAIEASRVLIVIFSTNYASSSWCLQELAKIADCIHVPGQSVLPIFYDVSPSEVRKQSGDYEKAFQVQEERFNENLEEMQRWRGALTQVANLSGWDVRDKPQYAEIGKIINEVTCLLGSKSLNLPRDLVGMHSRVEELENLLILDSDDDDDVRVVGISGMGGIGKTTLATALYARISNQFDACCFIDDVSKIYGDHGPIGVQKQLLCQTLNEENLQICNLSMASNLIRTRLCRIKSLVVLDNVDEVEQLDKLDMKREWLGTGSRIIIISRNGHILREHGADEVYKVRLLDRKCALQLFCRKAFKSDDIMSGYIYLTYEVLAYANGLPLAIQVLGSFLYGRDASEWRSALSRLRENPMTSIMNVLRISFDGLEDTEKEIFLDIACFFYRDTERYVKKILNFRGFHPEIGLRVLIDKSFITCENQIICMHDLFRELGKSIVKEKSPKEPRKWNRLWDYKDVHNVISENMATENLEAIVMQYHPANDREIQKMTTLRADALAQMSRLKLLKLVMFNFSGSLNFLSSELGYLYWDKYPFASLPSSFQPNKLVELILKHSNIKKLWEGTKCLPNLTHIDLSDSKNLIMMPNFEEIPNLESLNLEGCIKLVKIDPSIGTLRMLSRLNLKNCTNLVSIPNNIFGLNSLKHLILSGCPNLFNNLLEIQSQIEHPEKLDNKESTTQYQLTSFIYKFLKPHFQFLIFRKPEESVGLLLPSLSHLSCLQYLDLSFCNLLKIPNAIGLLHCLETLYLGGNNFVTLPSSMKELSKLRELNLQHCKYLKYLPELPSKAVLPIRKTFFGRYSAGLYIFDCPGLIEMESCYGIAFSWMILLLQVHLQSDIPISHMNIVIPKTQIPRWFNKQNVGSSISIDPSSIMHDKNWIGVACCLTFVAHDNPTNLSDELSPNIAFGFQCKRRGIYPIIPIRLGKELVTVDLDHLLLIFFSREEFIGMISDITEGLDDISGIELKAIVDQPLGMHLEVKNCGYRWIFKEDLEQLNPQMMYSGNSSVQPYY 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03482 1068 Pfam TIR domain 14 159 IPR000157 GO:0007165
Vivi5g03482 1068 Gene3D - 351 434 IPR042197 -
Vivi5g03482 1068 Gene3D - 183 347 IPR027417 -
Vivi5g03482 1068 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 157 IPR035897 -
Vivi5g03482 1068 Gene3D - 8 182 IPR035897 -
Vivi5g03482 1068 ProSiteProfiles Leucine-rich repeat profile. 778 799 IPR001611 GO:0005515
Vivi5g03482 1068 Pfam Leucine Rich Repeat 608 627 IPR011713 -
Vivi5g03482 1068 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 181 - -
Vivi5g03482 1068 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 856 IPR044974 GO:0006952
Vivi5g03482 1068 SMART till_3 14 154 IPR000157 GO:0007165
Vivi5g03482 1068 ProSiteProfiles TIR domain profile. 13 179 IPR000157 GO:0007165
Vivi5g03482 1068 Gene3D Ribonuclease Inhibitor 546 739 IPR032675 -
Vivi5g03482 1068 Pfam C-JID domain 905 1050 IPR045344 -
Vivi5g03482 1068 PRINTS Disease resistance protein signature 292 306 - -
Vivi5g03482 1068 PRINTS Disease resistance protein signature 385 399 - -
Vivi5g03482 1068 PRINTS Disease resistance protein signature 216 231 - -
Vivi5g03482 1068 PRINTS Disease resistance protein signature 820 836 - -
Vivi5g03482 1068 Pfam NB-ARC domain 206 420 IPR002182 GO:0043531
Vivi5g03482 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 444 IPR027417 -
Vivi5g03482 1068 SUPERFAMILY L domain-like 489 841 - -
Vivi5g03482 1068 Gene3D Ribonuclease Inhibitor 762 883 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03482 Vivi-Chr5 126795227 126799722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03482 15 805 WRKY Transcription Factor Family AT4G12020 31.153 3.76e-90 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03482 - - psat:127106907 1745.71