Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03479 ATGCAAATCTTTGTGAAAACATTGACCGGCAAAACTATTACCCTTGAGGTTGAGAGTTCAGATACTATTGATAACGTGAAAGCTAAGATTCATGACAAGGAGGGTATTCCAGCGGATCAACAAAGGCTTATTTTTGCAGGGAAACAGCTTGAAGATGGAAGGACGCTAGCTGATTATAACATCCAGAAGGAATCCACTCTCCATTTGGTATTGAGGCTCCGTGGCGGTATGCAAATTATTGTAAGGAACATTGCTAATAAGACCACCATAACTTTGGAGGTAGAAAGTTCTGATAAAATTGTGAGTGTGAAGGAGAGAATTCAGGAGAAACAAGGAATTCCCACAAACCAACAGAGGCTAACTATTGCTGGGAAGGAATTGGAAGATGGTCGCACCCTTGCTGATTACAACATCCAGAAGGAATACAGTCGTCGGGGCATGGAAATTCGTGTAAGGAACATTGCTAATAAGACCACCATAACTTTGGAGGTAGAAAGTTGTGATACAATTGAGAGTGTGAAGGCCAAAATTCAAAAAAAAGAGGCAATTCCATCAGATCAACAGAGGCTAACTTTCGCTAGGAAGGAATTGGAAGATGGTCGCACCCTTGCTGATTACAACATCCAGAATGAATACACTCTCGCTCTAGCTTTGAGGCGTCGTCGGCCCATGGAAATTCTTGTAAGGAACTTTATTATTGATAATACCACCATGACTTTGGAGGTAGAAAGTTCTGATAAAATTGTGAGTGTGAAGGAGACAATTCAGGAGAAACAGGGAATTCCCACAAACCGACAGAGGCTAATTTTCGCTGGAAAGGAATTGGAAGATGATCACACCCTTGCTGATTACAACATCCAGGAGGAATACACTCTCGATCTAGTTTTGAGGCGTCCTCGGGGCATGGAAATTCTTGTAAGGAACTATACTAATATGACCATCATAACTTTGGAGTTAGAAAGTTGTGATACAATTGAGAGTGTGAAGGAGAAAATTCAGAAAAAAGAGGGAATTCCATCCGACCAACAGAGGCTAATATTCGATGGGAAGGAATTGGAGGATGGTCGCACCCTTGCCGATTACAACATCCAGAAGGAATCTACTCTCGCTCTAGTTTCGAGGCGCATGGAAATTCCTTCTACTCTCGCTCTAGTTTCGAGGCGCATGGAAATTCTTGTTGAGATCTTTACTACTCAAAAGACGATAACTTTGGAGGTAGAAAGTTGTGATACAATTGAGAGTGTGAAGGCCAAAATTCAGGAAAAAGAGGGAATTCCATCAGACCAGACACTAATTTTATATGGGAAGGCATTAAAGGATAGTCGGACTCTGGCGGATTATAATATCCAGAATGGGTCGAAACTATATATACCTGGTTTATATTAG 1386 0.4141 MQIFVKTLTGKTITLEVESSDTIDNVKAKIHDKEGIPADQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIIVRNIANKTTITLEVESSDKIVSVKERIQEKQGIPTNQQRLTIAGKELEDGRTLADYNIQKEYSRRGMEIRVRNIANKTTITLEVESCDTIESVKAKIQKKEAIPSDQQRLTFARKELEDGRTLADYNIQNEYTLALALRRRRPMEILVRNFIIDNTTMTLEVESSDKIVSVKETIQEKQGIPTNRQRLIFAGKELEDDHTLADYNIQEEYTLDLVLRRPRGMEILVRNYTNMTIITLELESCDTIESVKEKIQKKEGIPSDQQRLIFDGKELEDGRTLADYNIQKESTLALVSRRMEIPSTLALVSRRMEILVEIFTTQKTITLEVESCDTIESVKAKIQEKEGIPSDQTLILYGKALKDSRTLADYNIQNGSKLYIPGLY 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03479 461 ProSitePatterns Ubiquitin domain signature. 329 354 IPR019954 -
Vivi5g03479 461 ProSiteProfiles Ubiquitin domain profile. 147 223 IPR000626 GO:0005515
Vivi5g03479 461 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vivi5g03479 461 ProSiteProfiles Ubiquitin domain profile. 302 375 IPR000626 GO:0005515
Vivi5g03479 461 FunFam 2'-5'-oligoadenylate synthase-like protein 2 225 298 - -
Vivi5g03479 461 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vivi5g03479 461 ProSiteProfiles Ubiquitin domain profile. 389 457 IPR000626 GO:0005515
Vivi5g03479 461 SUPERFAMILY Ubiquitin-like 147 223 IPR029071 -
Vivi5g03479 461 SUPERFAMILY Ubiquitin-like 222 301 IPR029071 -
Vivi5g03479 461 SUPERFAMILY Ubiquitin-like 298 374 IPR029071 -
Vivi5g03479 461 PANTHER UBIQUITIN 225 305 - -
Vivi5g03479 461 CDD Ubl_ubiquitin 1 76 - -
Vivi5g03479 461 ProSiteProfiles Ubiquitin domain profile. 224 301 IPR000626 GO:0005515
Vivi5g03479 461 ProSitePatterns Ubiquitin domain signature. 252 277 IPR019954 -
Vivi5g03479 461 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vivi5g03479 461 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vivi5g03479 461 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vivi5g03479 461 SUPERFAMILY Ubiquitin-like 385 457 IPR029071 -
Vivi5g03479 461 SUPERFAMILY Ubiquitin-like 77 140 IPR029071 -
Vivi5g03479 461 FunFam Polyubiquitin 3 1 76 - -
Vivi5g03479 461 ProSiteProfiles Ubiquitin domain profile. 77 141 IPR000626 GO:0005515
Vivi5g03479 461 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vivi5g03479 461 FunFam Polyubiquitin-C 147 222 - -
Vivi5g03479 461 Pfam Ubiquitin family 226 298 IPR000626 GO:0005515
Vivi5g03479 461 Pfam Ubiquitin family 393 456 IPR000626 GO:0005515
Vivi5g03479 461 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vivi5g03479 461 Pfam Ubiquitin family 79 141 IPR000626 GO:0005515
Vivi5g03479 461 Pfam Ubiquitin family 149 221 IPR000626 GO:0005515
Vivi5g03479 461 Pfam Ubiquitin family 304 374 IPR000626 GO:0005515
Vivi5g03479 461 Gene3D - 77 142 - -
Vivi5g03479 461 SMART ubq_7 77 144 IPR000626 GO:0005515
Vivi5g03479 461 SMART ubq_7 1 72 IPR000626 GO:0005515
Vivi5g03479 461 SMART ubq_7 302 374 IPR000626 GO:0005515
Vivi5g03479 461 SMART ubq_7 224 297 IPR000626 GO:0005515
Vivi5g03479 461 SMART ubq_7 389 460 IPR000626 GO:0005515
Vivi5g03479 461 SMART ubq_7 147 219 IPR000626 GO:0005515
Vivi5g03479 461 FunFam Polyubiquitin-C 302 377 - -
Vivi5g03479 461 CDD Ubl_ubiquitin_like 79 141 - -
Vivi5g03479 461 Gene3D - 223 301 - -
Vivi5g03479 461 Gene3D - 1 76 - -
Vivi5g03479 461 Gene3D - 302 381 - -
Vivi5g03479 461 Gene3D - 143 222 - -
Vivi5g03479 461 Gene3D - 389 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03479 Vivi-Chr5 126645112 126646855 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03479 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 96.104 1.44e-45 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03479 K08770 - vvo:131602401 883.634