Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03477 ATGGTTAAAGATATCATTGCTCGTGCTAGGACTGGAACCGGGAAGACACTAGAATTTGGAATTCCAATTATCAAGGGTCTCATTGAGAATGGACAAAGCACTATGAGTGGTGTTTATCATCATATTCAGAGGAATGCGCTTTTGCGTGGGGTTGATGTTGTGGTCGGAACACCTGGGAGACTGATTGACCTGATAAATGAGAAAAACCTTAAACTTAGTGAAATTCAGTATTTGGTACTTGATGAGGCCTATCAGATGCTTGCTGTTGGGTTTGAGAAGGATGTGGAAGTGATTTTAGAAAAGATTCAGCTCAGTTGCAGATCATGCTTTTCTCTGCGACCATGTCGGGTTGGGTCAAGAAGTTGTCAAGAAAACATTTGA 381 0.4147 MVKDIIARARTGTGKTLEFGIPIIKGLIENGQSTMSGVYHHIQRNALLRGVDVVVGTPGRLIDLINEKNLKLSEIQYLVLDEAYQMLAVGFEKDVEVILEKIQLSCRSCFSLRPCRVGSRSCQENI 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03477 126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 104 IPR027417 -
Vivi5g03477 126 PANTHER RNA HELICASE 43 103 - -
Vivi5g03477 126 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 35 105 IPR014001 -
Vivi5g03477 126 Pfam DEAD/DEAH box helicase 35 107 IPR011545 GO:0003676|GO:0005524
Vivi5g03477 126 Gene3D - 1 34 IPR027417 -
Vivi5g03477 126 Gene3D - 35 112 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03477 Vivi-Chr5 126542014 126543228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03477 3 110 Eukaryotic Initiation Factors Gene Family AT3G19760 26.950 4.94e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03477 - - vvo:131607280 249.98