Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03475 ATGCAAATCTTTGTGAAAACATTGACCGGCAAAACTATCATCCTTGAGGTTGAGAGTTCAGATACTATTGATAACGTGAAAGCTAAGATTCATGACAAGGAGGGTATTCCAGCGGATCAACAAAGGCTTATTTTTGCAGGGAAACAGCTTGAAGATGGAAGGACACTAGCTGATTATAACATCCAGAAGGAATCCACTCTCCATTTGGTTTTGAGGCTCCGTGGCGGTATGCAAATTCTTATAAGGCACTCTACTTTTAAGACCTTCTTAACTTTGGAGGTAGAAAGTTCTGATAAAATTATGAGTGTGAAGGAGAAAATTCAGGAGAAACAGGGAATTCCCACAGACCAACAGAGGCTAAGTTTCGCTGGGAAGGAATTGGAAGATGGTCGCACCCTTGCTGATCACAACATCCAGAATGAATACACTCTCACTCTAGCTTTGAGGCGTCGTCGGGGCATGGAAATTCTTGTAAGTAACTTTATTACCGATACCACCATGACTTTGGAGGTAGAAAGTTCTGATAAAATTGTGAGTGTGAAGGAGACAATTCAGGAGAAACAGGGAATTCCCAAATACCAACAGAGGCTAATTTTCGCTGGGAAGGAATTGGAAGATGGTCGCACCCTGGCTGATTACAACATCCAGAAGGAATACACTCTCGATCTAGTTTTGAGGCGTCCTCGGGGCATGGAAATTCTTGTAAGGAACTATACTAATATGACCATCATAACTTTGGAGTTAGAAAGTTGTGATACAATTGAGAGTGTGAAGGAGAAAATTCAGAAAAAAGAGGGAATTCCATCAGACCAACAGAGGCTAATATTCGATGGGAAGGAATTGGAGGATGGTCGCACCCTTGCCGATTACAACATCCAGAAGGAATCTACTATCGCTCTAGTTTCGAGGCGCATGGAAATTCCTTCTACTCTCGCTCTAGTTTCGAGGCGCATGGAAATTATTGTTAAGATCTATACTACTAAAAAGAAGATAACTTTGGAGGTAGAAAGTTGTGATACAATTGGGAGTGTGAAGGCCAAAATTCAGGAAAAAGAGGGAATTCCATCGGACCAGTCACTAATTTTCAATGGGAAGACATTAAAGGATAGTCGTACTCTGGCGGATTATAATATCCAGAATGGATCGAAACTACATATAACTGGATAA 1167 0.4122 MQIFVKTLTGKTIILEVESSDTIDNVKAKIHDKEGIPADQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQILIRHSTFKTFLTLEVESSDKIMSVKEKIQEKQGIPTDQQRLSFAGKELEDGRTLADHNIQNEYTLTLALRRRRGMEILVSNFITDTTMTLEVESSDKIVSVKETIQEKQGIPKYQQRLIFAGKELEDGRTLADYNIQKEYTLDLVLRRPRGMEILVRNYTNMTIITLELESCDTIESVKEKIQKKEGIPSDQQRLIFDGKELEDGRTLADYNIQKESTIALVSRRMEIPSTLALVSRRMEIIVKIYTTKKKITLEVESCDTIGSVKAKIQEKEGIPSDQSLIFNGKTLKDSRTLADYNIQNGSKLHITG 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03475 388 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vivi5g03475 388 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vivi5g03475 388 SUPERFAMILY Ubiquitin-like 153 230 IPR029071 -
Vivi5g03475 388 ProSitePatterns Ubiquitin domain signature. 258 283 IPR019954 -
Vivi5g03475 388 SUPERFAMILY Ubiquitin-like 229 303 IPR029071 -
Vivi5g03475 388 PANTHER UBIQUITIN 318 386 - -
Vivi5g03475 388 Gene3D - 318 387 - -
Vivi5g03475 388 ProSiteProfiles Ubiquitin domain profile. 77 153 IPR000626 GO:0005515
Vivi5g03475 388 FunFam Polyubiquitin-C 231 306 - -
Vivi5g03475 388 FunFam Polyubiquitin 5 77 153 - -
Vivi5g03475 388 ProSitePatterns Ubiquitin domain signature. 181 206 IPR019954 -
Vivi5g03475 388 FunFam Polyubiquitin 3 1 76 - -
Vivi5g03475 388 Gene3D - 155 229 - -
Vivi5g03475 388 Gene3D - 230 310 - -
Vivi5g03475 388 Gene3D - 1 76 - -
Vivi5g03475 388 Gene3D - 77 154 - -
Vivi5g03475 388 SUPERFAMILY Ubiquitin-like 313 387 IPR029071 -
Vivi5g03475 388 ProSiteProfiles Ubiquitin domain profile. 144 230 IPR000626 GO:0005515
Vivi5g03475 388 SUPERFAMILY Ubiquitin-like 76 153 IPR029071 -
Vivi5g03475 388 CDD Ubl_ubiquitin 1 76 - -
Vivi5g03475 388 FunFam Polyubiquitin 5 154 230 - -
Vivi5g03475 388 ProSiteProfiles Ubiquitin domain profile. 318 388 IPR000626 GO:0005515
Vivi5g03475 388 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vivi5g03475 388 Pfam Ubiquitin family 90 151 IPR000626 GO:0005515
Vivi5g03475 388 Pfam Ubiquitin family 156 227 IPR000626 GO:0005515
Vivi5g03475 388 Pfam Ubiquitin family 233 303 IPR000626 GO:0005515
Vivi5g03475 388 Pfam Ubiquitin family 320 386 IPR000626 GO:0005515
Vivi5g03475 388 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vivi5g03475 388 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vivi5g03475 388 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vivi5g03475 388 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vivi5g03475 388 ProSiteProfiles Ubiquitin domain profile. 231 304 IPR000626 GO:0005515
Vivi5g03475 388 SMART ubq_7 154 226 IPR000626 GO:0005515
Vivi5g03475 388 SMART ubq_7 1 72 IPR000626 GO:0005515
Vivi5g03475 388 SMART ubq_7 77 149 IPR000626 GO:0005515
Vivi5g03475 388 SMART ubq_7 320 387 IPR000626 GO:0005515
Vivi5g03475 388 SMART ubq_7 231 303 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03475 Vivi-Chr5 126532381 126533907 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03475 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 94.805 3.12e-45 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03475 K08770 - vvo:131602401 581.252