Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03470 ATGGCTTGTAGTAGCCTCCAAAGTGGCTCTTCATCTAGGATGAGATGGAAATATGATGTGTTTGTGAGCTTCAGAGGTGAAGACACCCGCAACAATTTCACCGATCACGTTTTTGGTGCTCTCCATAAAAAAGGTATTATTACCTTCAGGGATGATACAAAGCTCAAGAAAGGGGAAGATATATCATTTGAGCTTCTACAAGCTATTGAAGCATCCCGTGTTTTAATTGTTATTTTCTCAACAAACTATGCTTCTTCCACATGGTGCTTGCAAGAACTTGCTAAAATTGCCGACTGCATTCATGTTCCTGGACAATCTGTTTTACCTATTTTCTATGATGTCAGTCCTTCTGAGGTACGAAAGCAAACCGGAGATTATGGAAAAACCTTTCAAGAACATGAAGAAAGATTCAAAGCAAATTTAGAGGAAGTGCAAAAATGGAGAGGAGCCCTAACACAAGTAACTAATCTCTCTGGCTGGGATGTAAGAGATAAGCCACAGTATGTAGAGATTGGAAAAATTATTAAAGAGGTAGCATGCTTATTGGGAAACAAATATTCTAATTTACCTAGGGATATAGTTGGGATGCACTCTAGAGTGGAAGAATTAGAAAACCTTCTGATTTTGGACTCAGATGATGATGATGTTCGAGTTGTAGGGATTTCTGGAATGGGTGGAATAGGGAAGACAACTCTTGCGACTGCTTTGTATGCTAAAATCTCTAATCAATTTGACGCTTGCTGCTTTATTGATGATGTAAGTAAAATTTATGGAGATCATGGTCCTATTGGGGTACAAAAGCAACTTCTTTGTCAAACTTTAAATGAAGAAAATCTTCAAATATGCAATCTTCTTATGGCATCTAATTTGATTCGAACTAGGCTATGTCAAATTAAATCCCTTGTTGTTCTTGATAATGTTGATGAAGTTGAACAACTGGATAAATTGGACATGAAACGAGAATGGCTTGGCTCTGGGAGTAGAATAATCATAATTTCTAGAAATGGGCACATCTTGAGAGAGCATGGAGTAGATGAAGTGTACAGAGTTCGACTCTTGGATCGTAAAGACGCCCTTCAATTGTTTTGTAGGAAAGCTTTCAAAAGTGATCATATCATGAGCGGTTACATATACTTGACATATGAAGTACTGGCATATGCCAATGACCTTCCACTAGCAATTAAAGTGTTGGGCTCATTTTTGTATGGTCGAGATGTCTCTGAGTGGAGAAGTGCGTTGTCAAGATTAAGAGAAAATCCAAGGACAGATATTATGAATGTACTCCGAATTAGTTTTGATGGACTAGAGGATACAGAAAAGGATATATTTCTTGATATTGCTTGTTTCTTTTATGGAGACACTGAGACATACGTGAAGAAAGTTTTAGATTTTCGTGGATTTCATCCAGAAATTGGTTTAAAAGTTCTCATTGATAAATCATTCATAACCTGTGAGAAGAAAAACATTTGTATGCATGATTTGTTTAGAGAACTAGGGAAGAATATCATTAGAGAAAAATCACCCAAAGAACCAAGAAAGTGGAACAGGTTGTGGGACTACAAGGATGTCCACAAAGTTATCTCAGATAAGATGGCAACAGAAAACCTTGAAGCCATAGTTATGAGGTATGATCCAGAAAATGATATAGAAATACAAAAGATGACAACATTGAGAGCCGATGCTTTAGCAAAAATGAGTCACCTTAAATTGCTCAAGTTGTTGATGTTTAATTTCTCAGGAAGTCTCAATTTTCTTTCAAGTGAATTGGGTTATCTTTATTGGGATAAATATCCTTTCACTAGTTTGCCATCAAGTTTTCATCCGTACAAACTTGTTGAACTGATCCTACGACACAGCAACATTAGGAAACTATGGGAGGGCACAATGACTCTACCTAATTTGACACATATTGATCTCTCTCACTCGAAAAATCTTATTATGATGCCAAATTTTAAGGAGATTCCAAATCTTGAGAGCCTAGATCTTGAAGGATGTATAAAACTTGTGAAGATTGATCCGTCCATTGGCACCTTAAGAAGGCTTTCCAGATTACGTTTGAAAGATTGTACAAATCTGGTCAGTATTCCTAACAACATTTTTGGTCTGAGTTTTCTCAAAGATCTAATTCTCTCAGGCTGTCCAAATTTATTTAATAATAAGCAGTTAGAAATACAAAGACAAACAGAACAATTGGAGATGCTTGATAACAACGAAAGTACTATCCAATACCAACCAACACTGTTCATCTACAAATTTCTAGAGCCGCACTTCCGACATTTGATTTTTCAAAAACCTGAAGATTCAGTTGGTTTACTGTTGCCTTCATTGTCTCGTTTGTCGTGTTTGCAATATCTTGACCTGAGTTTCTGCAATCTTCTTCAAATACCTAATGCAATTGGGTTGTTACATTGCTTAGAAACCCTATATTTAGGGGGTAACAATTTTGTGACATTACCTTCTAGCATTAAGGAACTTTCCAAACTTAGAAGATTAAACTTACAGCACAGTAAGCAGCTGAAATATTTGCCTGAGCTACCTTCAAAAAAGAATGTTATGCCAAATGGCTTTTTCTTGGATGATACAATTCTTTCAGGTGCACATGCAATCGGACATCCCAATGGAAGTTATTACAATTGTTATTCCCAAAATTCAAATTCCAAAGTGGTTCAACAAACAAAATGTAGGTAG 2688 0.3642 MACSSLQSGSSSRMRWKYDVFVSFRGEDTRNNFTDHVFGALHKKGIITFRDDTKLKKGEDISFELLQAIEASRVLIVIFSTNYASSTWCLQELAKIADCIHVPGQSVLPIFYDVSPSEVRKQTGDYGKTFQEHEERFKANLEEVQKWRGALTQVTNLSGWDVRDKPQYVEIGKIIKEVACLLGNKYSNLPRDIVGMHSRVEELENLLILDSDDDDVRVVGISGMGGIGKTTLATALYAKISNQFDACCFIDDVSKIYGDHGPIGVQKQLLCQTLNEENLQICNLLMASNLIRTRLCQIKSLVVLDNVDEVEQLDKLDMKREWLGSGSRIIIISRNGHILREHGVDEVYRVRLLDRKDALQLFCRKAFKSDHIMSGYIYLTYEVLAYANDLPLAIKVLGSFLYGRDVSEWRSALSRLRENPRTDIMNVLRISFDGLEDTEKDIFLDIACFFYGDTETYVKKVLDFRGFHPEIGLKVLIDKSFITCEKKNICMHDLFRELGKNIIREKSPKEPRKWNRLWDYKDVHKVISDKMATENLEAIVMRYDPENDIEIQKMTTLRADALAKMSHLKLLKLLMFNFSGSLNFLSSELGYLYWDKYPFTSLPSSFHPYKLVELILRHSNIRKLWEGTMTLPNLTHIDLSHSKNLIMMPNFKEIPNLESLDLEGCIKLVKIDPSIGTLRRLSRLRLKDCTNLVSIPNNIFGLSFLKDLILSGCPNLFNNKQLEIQRQTEQLEMLDNNESTIQYQPTLFIYKFLEPHFRHLIFQKPEDSVGLLLPSLSRLSCLQYLDLSFCNLLQIPNAIGLLHCLETLYLGGNNFVTLPSSIKELSKLRRLNLQHSKQLKYLPELPSKKNVMPNGFFLDDTILSGAHAIGHPNGSYYNCYSQNSNSKVVQQTKCR 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03470 895 SUPERFAMILY L domain-like 491 844 - -
Vivi5g03470 895 Gene3D Ribonuclease Inhibitor 758 865 IPR032675 -
Vivi5g03470 895 Coils Coil 717 737 - -
Vivi5g03470 895 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 160 IPR035897 -
Vivi5g03470 895 Pfam TIR domain 17 165 IPR000157 GO:0007165
Vivi5g03470 895 Pfam Leucine Rich Repeat 782 797 IPR001611 GO:0005515
Vivi5g03470 895 Pfam NB-ARC domain 200 422 IPR002182 GO:0043531
Vivi5g03470 895 Pfam Leucine Rich Repeat 610 628 IPR011713 -
Vivi5g03470 895 Gene3D - 352 436 IPR042197 -
Vivi5g03470 895 Gene3D Ribonuclease Inhibitor 535 744 IPR032675 -
Vivi5g03470 895 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 446 IPR027417 -
Vivi5g03470 895 Gene3D - 12 183 IPR035897 -
Vivi5g03470 895 Gene3D - 184 347 IPR027417 -
Vivi5g03470 895 ProSiteProfiles TIR domain profile. 16 182 IPR000157 GO:0007165
Vivi5g03470 895 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 717 IPR044974 GO:0006952
Vivi5g03470 895 SMART till_3 17 157 IPR000157 GO:0007165
Vivi5g03470 895 PRINTS Disease resistance protein signature 387 401 - -
Vivi5g03470 895 PRINTS Disease resistance protein signature 218 233 - -
Vivi5g03470 895 PRINTS Disease resistance protein signature 652 668 - -
Vivi5g03470 895 PRINTS Disease resistance protein signature 294 308 - -
Vivi5g03470 895 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03470 Vivi-Chr5 126506623 126510233 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03470 18 831 WRKY Transcription Factor Family AT4G12020 30.924 1.95e-88 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03470 - - psat:127106907 1397.49