Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03449 ATGAGTCGCAACATGAACAATTTCACGCCTTTGCCGGGGCTTTGGAGAACAGGTTCTAGAGCCTATGATGATGCTCCTCACACTTCCAGTAATACTCATCAATCCAATGAAGTTCCTGTGTTTTACCGATCTCGTCACTCTACTAGGACCAATGATGAGAGGAGTTTAGGTGCACAAGATCCATTAAGGTTGTGGGAAATCAGAAGAACTCCTACAGAACATCATAGAGCATCAAATTTTCCAGCACAAACTCATAGAAGACAACAAACTTATGTTCCTAATGAAGAAATGGGAAGAAGAGGTTTCAACCCATCGAGACTCGGACAAATTTTCCAGCATTCACCTGTAAGATCGACATCAACGCATCAAACAAACACACAAGTTCCACATGTGGTAGAAGATTCCAAATCAACTATTTTAAGCAAGTTACGGAAAGTAGTCTATAACCCTATGCCAACGCAGTTAGCTAGAAAAGTGAGCTTATATTATAGAGGAAATGCTTCGAATGGTTTGAAAGAGAGTGTGAAAGAAAAGAATGAAGATGGTATGAAATGTGCTATTTGCTTGGAAGATTTTGAGACTAAAGAAGAAGTGATGCTTACTCCATGCAACCACATGTTCCATGAGGATTGTATTGTAACTTGGTTAACAAGCAAAGGTCAGTGTCCTGTGTGTAGGTTTGTGGTTTTTGAGGAAGTGAAGGGAAATTCATCTTCCTTAAATAGGAATGACATTGCCAATTGGGAACCCAATGGCATGATCTCTGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAAGTAGAGGGCATGGATTAA 828 0.4022 MSRNMNNFTPLPGLWRTGSRAYDDAPHTSSNTHQSNEVPVFYRSRHSTRTNDERSLGAQDPLRLWEIRRTPTEHHRASNFPAQTHRRQQTYVPNEEMGRRGFNPSRLGQIFQHSPVRSTSTHQTNTQVPHVVEDSKSTILSKLRKVVYNPMPTQLARKVSLYYRGNASNGLKESVKEKNEDGMKCAICLEDFETKEEVMLTPCNHMFHEDCIVTWLTSKGQCPVCRFVVFEEVKGNSSSLNRNDIANWEPNGMISGELLSILRAMEEAFQVEGMD 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03449 275 SMART ringv_2 184 226 IPR011016 GO:0008270
Vivi5g03449 275 SMART ring_2 185 225 IPR001841 -
Vivi5g03449 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 241 IPR013083 -
Vivi5g03449 275 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 57 227 - -
Vivi5g03449 275 FunFam RING/U-box superfamily protein 169 243 - -
Vivi5g03449 275 Pfam Ring finger domain 184 226 IPR001841 -
Vivi5g03449 275 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Vivi5g03449 275 MobiDBLite consensus disorder prediction 23 40 - -
Vivi5g03449 275 MobiDBLite consensus disorder prediction 1 40 - -
Vivi5g03449 275 SUPERFAMILY RING/U-box 176 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03449 Vivi-Chr5 126421563 126423564 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03449 139 269 C3H Transcription Factor Family AT3G58720 51.449 2.42e-39 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03449 - - psat:127107286 516.153