Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03443 ATGCAAATCTCTGTGCTAACATTATTGACTAGAAAAACCTTCACTCTTGAGGTGGAGAGTTCTGATACCATAGACAAGGTGAAAGCTAAGATCCACGACAAGGAAGGGTTTCCACCCGATCAGCAAAGGCTTATCTATTCACTTAAACCGCTTGAAGATGGTCGGACTCTAGCTGATTATCGCGTCGAGAAGCAATCCACTCTCGAATTGGTTTTAAGACCAATTGATGATGCTATGGAAGTTCTTGTTATCTTTCCTAATGAAAAGACGATAACATTGGAGGTAGAAAGTTTTGATACAATTGAAAGTGTGAAGGCGAAAATTGAGGAGAAAGAGGGAATTCCCGCAGACCAACAGAGGGTAATTTTCAATGGGAGGGGATTGATGGATGGTAACATTCTGGCTGATTATAATATCCAGAACGATAACCCTTACTGGGAAAACATGTCTCCGTGGGCGAAAGCTCTCAGAGTATGGATAAGCAATGAGGGTACTCCATCATATTAA 507 0.4142 MQISVLTLLTRKTFTLEVESSDTIDKVKAKIHDKEGFPPDQQRLIYSLKPLEDGRTLADYRVEKQSTLELVLRPIDDAMEVLVIFPNEKTITLEVESFDTIESVKAKIEEKEGIPADQQRVIFNGRGLMDGNILADYNIQNDNPYWENMSPWAKALRVWISNEGTPSY 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03443 168 ProSitePatterns Ubiquitin domain signature. 105 130 IPR019954 -
Vivi5g03443 168 ProSiteProfiles Ubiquitin domain profile. 1 73 IPR000626 GO:0005515
Vivi5g03443 168 PRINTS Ubiquitin signature 12 32 IPR019956 -
Vivi5g03443 168 PRINTS Ubiquitin signature 33 53 IPR019956 -
Vivi5g03443 168 PRINTS Ubiquitin signature 54 75 IPR019956 -
Vivi5g03443 168 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vivi5g03443 168 SMART ubq_7 79 150 IPR000626 GO:0005515
Vivi5g03443 168 SMART ubq_7 1 73 IPR000626 GO:0005515
Vivi5g03443 168 Gene3D - 79 144 - -
Vivi5g03443 168 ProSiteProfiles Ubiquitin domain profile. 79 143 IPR000626 GO:0005515
Vivi5g03443 168 Gene3D - 1 78 - -
Vivi5g03443 168 FunFam Polyubiquitin-C 1 75 - -
Vivi5g03443 168 Pfam Ubiquitin family 5 74 IPR000626 GO:0005515
Vivi5g03443 168 Pfam Ubiquitin family 86 142 IPR000626 GO:0005515
Vivi5g03443 168 PANTHER UBIQUITIN 85 142 - -
Vivi5g03443 168 SUPERFAMILY Ubiquitin-like 75 142 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03443 Vivi-Chr5 126309951 126310627 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03443 1 73 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 76.712 5.66e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03443 K08770 - vvo:131602385 322.783