Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03442 ATGGCTTCCGAGGCGAAATTGGCTAACCCTATGAGGGATATCAAGGTTCAGAAGCTTGTCCTCAACATCTCTGTTGGTGAGAGTGGAGATCGTCTCACCAGAGCTGCCAAGGTGCTAGAGCAACTCAGTGGACAAACCCCAGTGTTCTCCAAAGCAAGGTACACTGTCCGATCCTTTGGTATCAGAAGAAATGAGAAGATTGCATGCTATGTAACTGTTAGAGGTGACAAGGCCATGCAACTTTTGGAGAGTGGACTGAAGGTGAAGGAGTATGAACTTTTGAGGAGGAACTTCAGTGACACTGGATGCTTTGGCTTCGGAATTCAGGAGCATATTGATCTTGGAATCAAATATGATCCATCTACTGGTATTTATGGTATGGACTTCTTTGTTGTTTTGGAGCGTCCTGGTTATCGCGTTGGTCGTCGCCGTAGATGCAAAGCCCGTGTCGGAATCCAACACCGTGTTACCAAGGATGATGCGATGAAATGGTTCCAAGTGAAGTATGAGGGAGTTATCCTTAACAAGTCTCAGCAGATCTGA 543 0.4622 MASEAKLANPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQQI 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03442 180 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
Vivi5g03442 180 FunFam 60S ribosomal protein L11 2 174 - -
Vivi5g03442 180 SUPERFAMILY RL5-like 9 173 IPR022803 -
Vivi5g03442 180 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 172 IPR002132 GO:0003735|GO:0005840|GO:0006412
Vivi5g03442 180 Pfam ribosomal L5P family C-terminus 66 164 IPR031309 -
Vivi5g03442 180 Pfam Ribosomal protein L5 9 62 IPR031310 -
Vivi5g03442 180 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 2 176 IPR002132 GO:0003735|GO:0005840|GO:0006412
Vivi5g03442 180 Gene3D - 2 177 IPR022803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03442 Vivi-Chr5 126244203 126245883 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03442 1 180 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 96.111 8.50e-130 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03442 K02868 - thj:104803021 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03442 5 126244203 126245883 Vivi5g03442 5 126244203 126245883 ECH