Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03438 ATGGCTCGACCGATGGAGAAAGTGGTGGACATCAACGACACGAAAGAACTTTGGAAGGTGGCGGTGAGAGTTGTCCACAAATGGAAGGTTGTATCCAACAACAAGGAGCATTGTGAAATGATCTTTCAAGACAAAGAGGGTTCTGATATTCACGTAGTTGTTCCAACGACGTGCATGGCCGCTTACAATGACAAGTTTGAAGTGAACCACACATACACTGTATCTAACTTTGCAGTGCAGCCAAATAACTTGGTTTTTAAACCAAGCACCCACAAGTTCTTGGTGAAGTTCACTGGAGGAACTTCTGTGACTGATGTCGACAAACACGACATACCCCCCATACAACGCACCTTCACCAGTTTCCCTGATATTATCACCGGCAACTTTAAAAAGGACATGTTGATCGATGTTATCGGCGTTGTTGATGCTATTGGATATCAACAAACCGGGAGTGGTGGGAAAAAACTCAACAACACAATGAACTGCACCCTTTGGGAGGACTATGCCAAGCAGTTTTTCAAGTTTAGCGAGGAAAATGCTTCGACATCTGGACCAACTGTGGTTTTGCTTCTCTATGCAAAAGTTAAAGAACAGGGTATAATTTTCTCAAAAGAATCATTGCGTACCGTTTCAAGCCAGCTCAGCTCGCATTCTCAGCAATACTCCCGCAGCTCGGGTTCTGATAACGTTAGACAGAGTGACACTCAAAAGTTGCTTAGTAAGGCTGTTGCTCTGCCATTGAGTCGGATTAAACAACTGCGCGAGGACACTTTCTGTGCTACGGTTGCAAAGACACGAAAAATTATCGCTTCTTCCTATGGATGGTACTACCGGTGTTGCCATGCATGCACGAAATCGGCTCGCGGTGATAAACCTCCGTACGAATGTGATAATCGCCATTTGACTGAAACAGAAATCTATAAGTATAAGATTGAAGTTGAAGGGGTCCACCTTGAAACGTCTTGCAAGCTTATTTTTTGGGACAGAGAATGCACTCAGATCTTAGGTGTCTCTGCTGCCCAAATGCGGGACACAATGATACAGGCTGGTATCACAGATCCTTTGGAATTTCCCCTCAAGCTTGATGCCATGACGGGCTTGGATTTGGCTTTACGGGTTAGATGGCAGCCCAGTTGGGACAGCTGCTCTGTTATCATGTTTGTAGCTGACAAGCCGTTTGTTAAACAATTCGGTGCGCAATGGCAGCCTACACAGGCCAACCACACCAGTTCTGAACCCTCTGCGACAAAGCTTCCACCTCAGATAAAAGAGAGCGTCGATGAAGCTAACACTGCTGCTGCCGATGATTGTGACATTGTTACGGATTTAGAAATAACATCCAAGCATAACCCCGATCCGCAAACACCCACTGCAAAAAGGCAAAACCATGATGGCTCAAGCGAATCGACGACCGTGTGCGATGGGGAACTTTCATCGACAAAACTTAAAAAGATCATTAAGTTGGAGAAGAACAAATAG 1479 0.4523 MARPMEKVVDINDTKELWKVAVRVVHKWKVVSNNKEHCEMIFQDKEGSDIHVVVPTTCMAAYNDKFEVNHTYTVSNFAVQPNNLVFKPSTHKFLVKFTGGTSVTDVDKHDIPPIQRTFTSFPDIITGNFKKDMLIDVIGVVDAIGYQQTGSGGKKLNNTMNCTLWEDYAKQFFKFSEENASTSGPTVVLLLYAKVKEQGIIFSKESLRTVSSQLSSHSQQYSRSSGSDNVRQSDTQKLLSKAVALPLSRIKQLREDTFCATVAKTRKIIASSYGWYYRCCHACTKSARGDKPPYECDNRHLTETEIYKYKIEVEGVHLETSCKLIFWDRECTQILGVSAAQMRDTMIQAGITDPLEFPLKLDAMTGLDLALRVRWQPSWDSCSVIMFVADKPFVKQFGAQWQPTQANHTSSEPSATKLPPQIKESVDEANTAAADDCDIVTDLEITSKHNPDPQTPTAKRQNHDGSSESTTVCDGELSSTKLKKIIKLEKNK 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03438 492 Gene3D - 109 220 IPR012340 -
Vivi5g03438 492 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Vivi5g03438 492 MobiDBLite consensus disorder prediction 442 475 - -
Vivi5g03438 492 Gene3D - 221 387 IPR012340 -
Vivi5g03438 492 SUPERFAMILY Nucleic acid-binding proteins 7 104 IPR012340 -
Vivi5g03438 492 CDD RPA1_DBD_A_like 19 103 - -
Vivi5g03438 492 SUPERFAMILY Nucleic acid-binding proteins 117 198 IPR012340 -
Vivi5g03438 492 Gene3D - 3 105 IPR012340 -
Vivi5g03438 492 MobiDBLite consensus disorder prediction 447 475 - -
Vivi5g03438 492 SUPERFAMILY Nucleic acid-binding proteins 250 376 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03438 Vivi-Chr5 126220344 126223162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03438 1 144 Core DNA Replication Machinery Family AT5G08020 25.166 1.55e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03438 - - vvo:131605367 950.658