Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03433 ATGCAAATCTCTGTGTTAACATTATTGACTAGAAAAACTTTCACTCTTGAGGTGGAGAGTTCTGATACCATAGACAAGGTGAAAGCTAAGATCCAAGACAAGGAAGGGTTTCCACCCGATCAGCAAAGGCTTATCTATTCACTTAAACCGCTTGAAGATGGTCGGACTCTAGCTGATTATCGCGTCGAGAAGCAATCCACTCTCGAATTGGTTTTAAGACCAATTGATGATGCTATGGAAGTTCTTGTTATCTTTCCTAATGAAAAGACGATAACATTGGAGGTAGAAAGTTTTGATACAATTGAAAGTGTGAAGGCGAAAATTGAGGAGAAAGAGGGAATTCCCGCAGACCAACAGAGGGTAATTTTCAATGGGAGGGGATTGATGGATGGTAACATTCTGGCTGATTATAATATCCAGAACGATAACCCTTACTGGGAAAACATATCTCCGTGGGCGAAAGCTCTCAGAGTATGCAGGATAAGCAATGAGGGTACTCCATCATATTAG 510 0.4098 MQISVLTLLTRKTFTLEVESSDTIDKVKAKIQDKEGFPPDQQRLIYSLKPLEDGRTLADYRVEKQSTLELVLRPIDDAMEVLVIFPNEKTITLEVESFDTIESVKAKIEEKEGIPADQQRVIFNGRGLMDGNILADYNIQNDNPYWENISPWAKALRVCRISNEGTPSY 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03433 169 ProSitePatterns Ubiquitin domain signature. 105 130 IPR019954 -
Vivi5g03433 169 Gene3D - 79 144 - -
Vivi5g03433 169 Pfam Ubiquitin family 5 74 IPR000626 GO:0005515
Vivi5g03433 169 Pfam Ubiquitin family 86 142 IPR000626 GO:0005515
Vivi5g03433 169 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vivi5g03433 169 ProSiteProfiles Ubiquitin domain profile. 79 143 IPR000626 GO:0005515
Vivi5g03433 169 ProSiteProfiles Ubiquitin domain profile. 1 73 IPR000626 GO:0005515
Vivi5g03433 169 SMART ubq_7 1 73 IPR000626 GO:0005515
Vivi5g03433 169 SMART ubq_7 79 150 IPR000626 GO:0005515
Vivi5g03433 169 PRINTS Ubiquitin signature 33 53 IPR019956 -
Vivi5g03433 169 PRINTS Ubiquitin signature 12 32 IPR019956 -
Vivi5g03433 169 PRINTS Ubiquitin signature 54 75 IPR019956 -
Vivi5g03433 169 FunFam Polyubiquitin-C 1 75 - -
Vivi5g03433 169 SUPERFAMILY Ubiquitin-like 75 142 IPR029071 -
Vivi5g03433 169 Gene3D - 1 78 - -
Vivi5g03433 169 PANTHER UBIQUITIN 85 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03433 Vivi-Chr5 126111005 126111985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03433 1 73 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 78.082 1.49e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03433 - K08770 vvo:131602385 336.65