Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03424 ATGGCCAGCACCAGCAGCACCTCTTCAGCTTTGGTGACATCAACAAGGAGAAACTATTTTGATGTGTTTGTGAGCTTTAGAGGTAAAGATACTCGCTTCAATTTCACCGATCATCTTTTTGCAGCCCTCCAAAGAAACGGTATTTCTGCATTCAGGGATGACACTAAACTCAACAAAGGTGAATCCATAGCACCTGAACTCCTTCGAGCAATAGAAGACTCTCAGATTTTCATTGTGGTTTTCTCTAAGAACTATGCTTCCTCAACTTGGTGCTTGAGAGAATTGGAACACATCCTTCTTCACTGCAATCAACCATCGAAAAAACGTGTTCTGCCTGTTTTCTATGATGTTGATCCGTCAGCGGTGAGACATCAAAAAGGAACTTATAGCGAAGCCTTGGCTAAACATGAAGAAAGATTTCAACAAGACTCTCAGAAGGTGCAAAGATGGAGGGCAGCTCTAGCACAAGTCGCAGATCTCTCTGGTTGGGATGTACATCATAAGCCACAACATGCAGAGATTGAAAAGATTGTTGAAGAGGTTATAACGATATTAGGTAGAAAGTTTTCAAGTCTTCCAAAACATTTAGTAGGGATACACTCTCCTATGCAAGAATTAGAAAAGCAGTTACTTTTGGATTCACTTGATGACGTCCGCATTTTAGGAATTTGTGGGATGGGTGGAATTGGGAAGACAACTCTCGCTAAAGCTTTATACAACAAAATCTCTCATCAATTTGATGTATTTTGCTTTATTGACGATTTAAGCAAAAGTTATAGGCAAGATGGTCCGATTAGTGCACAAAAACAAATTCTACTTCAAACTGTAGGCAATCAACAGCTTCAAACATACAACTCTTGCAACGTATCTAACCAGATAGGAAGTAGGCTACATCGTGTAAGGGCCCTTATAACAATTGACAATGTTGATCAAGTTAAGCAACTCGAGAATTTAGATCGTGAATGGTTTGGTCCGGGGAGCAGGATAATTATAATTTCTAGAGACGAGCATATATTAAAAGAGTATGAAGTGGATGTTGTTTACAAAGTTCCACTCTTGAATCAAAAAGACTCTTTTCAATTACTAAGTCGAAAAGCTTTCAAACTTGATCATATTGTGAGTAGTTATGATAGGTTGGCATTTGAGATACTAGATTATACAAATGGCTTGCCACTGGCAATTGATGTATTGGGTTCATTTTTGTTCGATCGTAATATCTCTGAATGGGAAAGTGCATTGGCAAGATTGAGAGAAAGGCCAAACAAAGATATCATGGATGTATTGCGATTAAGTTTTGATGGGTTGGAGGAACCGGAACAAGAAATATTCCTTCATATTGCTTGTTTTTTCAATCATTACAATGTGGAACATTTTACGAAAGTCCTTAATTGTTGTGGATTTCAAGCTGATATTGGATTGAGAGTTCTAATTGATAAATCACTTATAAGCCATGTGGAATATAATAATTCTGTAAGGATGCAAGGTTTGTTGGTTGAGTTGGGAAAAAAAATAGCTCAAGAAAAATCAAGAAAATGGAGCAGGTTGTGGGATAAAGAACAGTTCTACGATGTTAAGTTGGAGAATATGGAAAAGAAAGTTGAAGCCATTTGTACTGAACGTGAGATGACGATCATAGCTGAAACATTGTCAAAAATGAGCCATTTAAGACTTCTCATACTGAACAGAGTTGATTTTTTAGGAAACCTCAATTGCCTTTCTAACGAGTTAAGATACATGGAATTACAAGTTTATCCTTTCAAGTATTTTCCATCAAGTTTTCATCCTAATCAACTTGTTGAATTGATCTTGAGTTATAGCCGCATCAAACAACTATGGAAAGACAAGAAGTATTTTCCCCATTTGAGAAATTTGGATCTGAGCCACTCAAAAAATCTACAAAAGATGCCAGATTTTAGAGATATTCCAAATCTTGAGCGATTAAGTTTTGAAGGATGTGTAAAGTTGGTGCAGATGGATCCTTCTATTGGGTTTCTAAAAAAGCTTGTTTTCTTGAATTTGAAAGATTGCAAAAATCTAGCAAGCATACCAAACAACATATTTAGCCTCAACTCTCTAAATTGTGTAAATCTTTCGGGGTGTCACAAAGTTTTTAAGAATCATAGGAATTTGAATATAACTGCTGACACGTCAAATTCCCAATCAACTACCTCCTCCATCTTGAAATGGAAAGCATTTCGTTACCATTCCTTGAACTCTCATGCACACAAAGATTTAGCTAGTTGTTTGTTGCCTTTCTTGGTTAGCTTCTCTAGATTGGTTGAACTTGATGTTAGTTTTTGTGGTCTAAGCCAACTCCCTGATGCAATTGGATGTTTACGTTGGCTACAAGAATTAAATTTAGGAGGAAACAATTTTGTAACATTGCCTAGTCTGAAGGAGCTTTGCAGACTTGCATTTTTAAACTTGGAGCATTGCAAGCTCTTGGAATCTTTGCCTCAACTTCCTTTTCCTACTGCTATTGATCGGGGCCTTAGAAAGAACAATTATGAGAATAAAAAAGGATTGGTCATTTTCAATTGTCCTAAATTGAGTGTAACGGAACTTGGATGTACCGTCATATTTTCGTGGATGATACAGTTTATTCAGGCAAACCAAGTATTCTCTTCAATCTATGATATGAATTGTTTTGTAGTCCCAGGAAGTGAAATACCAAGTTGGTGCAATAATCAGAGTGAGGGTGATTCAGTAAAAATAGATCTATCTCCCATTATGCCAGGCAATAACAATAATATTACTGGCATTGCTTTTTGTGCAATATTTTTTGTTGCACCTGTTGACCCAACTATGACAACATGTGTACAAAGACTTAAAATAGAAATGTATATTAGTGATGGTCTAACTCAAATGGCATGGTTTAACAAAGCTCCAGTAGTTCTTGAAAGAGATCTTATTGAGATCGAATCAGATCACATGTGCCTAATTTACTTCCCTCTGGAAACAATTCTTCATTGTCTGAAGAGTGTGGACGAAACTCTCAGTCATCTTGATCAATTTAAGTTGTGGCTTAAAATTGATTATGGTAAAGGCCGATGTGAGGATTTGAATTGTAAGGTTTTGAAGTGCGGGTATCATTGGGTAAATAAACAACACCAAGAGTCTCTGTCGAAACTCCATAGCTGGGAGCTGCAAGTTTTTGGCAATTGA 3165 0.3687 MASTSSTSSALVTSTRRNYFDVFVSFRGKDTRFNFTDHLFAALQRNGISAFRDDTKLNKGESIAPELLRAIEDSQIFIVVFSKNYASSTWCLRELEHILLHCNQPSKKRVLPVFYDVDPSAVRHQKGTYSEALAKHEERFQQDSQKVQRWRAALAQVADLSGWDVHHKPQHAEIEKIVEEVITILGRKFSSLPKHLVGIHSPMQELEKQLLLDSLDDVRILGICGMGGIGKTTLAKALYNKISHQFDVFCFIDDLSKSYRQDGPISAQKQILLQTVGNQQLQTYNSCNVSNQIGSRLHRVRALITIDNVDQVKQLENLDREWFGPGSRIIIISRDEHILKEYEVDVVYKVPLLNQKDSFQLLSRKAFKLDHIVSSYDRLAFEILDYTNGLPLAIDVLGSFLFDRNISEWESALARLRERPNKDIMDVLRLSFDGLEEPEQEIFLHIACFFNHYNVEHFTKVLNCCGFQADIGLRVLIDKSLISHVEYNNSVRMQGLLVELGKKIAQEKSRKWSRLWDKEQFYDVKLENMEKKVEAICTEREMTIIAETLSKMSHLRLLILNRVDFLGNLNCLSNELRYMELQVYPFKYFPSSFHPNQLVELILSYSRIKQLWKDKKYFPHLRNLDLSHSKNLQKMPDFRDIPNLERLSFEGCVKLVQMDPSIGFLKKLVFLNLKDCKNLASIPNNIFSLNSLNCVNLSGCHKVFKNHRNLNITADTSNSQSTTSSILKWKAFRYHSLNSHAHKDLASCLLPFLVSFSRLVELDVSFCGLSQLPDAIGCLRWLQELNLGGNNFVTLPSLKELCRLAFLNLEHCKLLESLPQLPFPTAIDRGLRKNNYENKKGLVIFNCPKLSVTELGCTVIFSWMIQFIQANQVFSSIYDMNCFVVPGSEIPSWCNNQSEGDSVKIDLSPIMPGNNNNITGIAFCAIFFVAPVDPTMTTCVQRLKIEMYISDGLTQMAWFNKAPVVLERDLIEIESDHMCLIYFPLETILHCLKSVDETLSHLDQFKLWLKIDYGKGRCEDLNCKVLKCGYHWVNKQHQESLSKLHSWELQVFGN 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03424 1054 Gene3D - 352 436 IPR042197 -
Vivi5g03424 1054 ProSiteProfiles Leucine-rich repeat profile. 781 802 IPR001611 GO:0005515
Vivi5g03424 1054 Gene3D Ribonuclease Inhibitor 724 856 IPR032675 -
Vivi5g03424 1054 ProSiteProfiles TIR domain profile. 18 185 IPR000157 GO:0007165
Vivi5g03424 1054 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 706 IPR044974 GO:0006952
Vivi5g03424 1054 Pfam NB-ARC domain 204 422 IPR002182 GO:0043531
Vivi5g03424 1054 Pfam C-JID domain 885 1037 IPR045344 -
Vivi5g03424 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 446 IPR027417 -
Vivi5g03424 1054 SUPERFAMILY L domain-like 542 864 - -
Vivi5g03424 1054 SMART till_3 19 160 IPR000157 GO:0007165
Vivi5g03424 1054 PRINTS Disease resistance protein signature 387 401 - -
Vivi5g03424 1054 PRINTS Disease resistance protein signature 296 310 - -
Vivi5g03424 1054 PRINTS Disease resistance protein signature 616 632 - -
Vivi5g03424 1054 PRINTS Disease resistance protein signature 220 235 - -
Vivi5g03424 1054 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 187 - -
Vivi5g03424 1054 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 163 IPR035897 -
Vivi5g03424 1054 SUPERFAMILY "Winged helix" DNA-binding domain 423 522 IPR036390 -
Vivi5g03424 1054 Pfam TIR domain 20 187 IPR000157 GO:0007165
Vivi5g03424 1054 Gene3D Ribonuclease Inhibitor 497 716 IPR032675 -
Vivi5g03424 1054 Gene3D - 14 186 IPR035897 -
Vivi5g03424 1054 ProSiteProfiles SOCS box domain profile. 797 837 IPR001496 -
Vivi5g03424 1054 Gene3D - 187 348 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03424 Vivi-Chr5 126025321 126029275 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03424 20 797 WRKY Transcription Factor Family AT4G12020 30.307 1.35e-76 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03424 - - tpra:123883787 1110.52