Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03421 ATGATGTCCAGATCGTATACAAACCTTTTAGATTTGGCTTCTGGGAATTTCCCGGCGATGGGATCGGGGAAAGAGTTTAAAGAACGAAGGCGGATGCCAAGGGTTATGAGTGTCCCGGGGTTTGTTCCGGAGGTGGATGATGATCAGGCTGTAAGTGTTTCTTCTGATAATCCGTCAACTATTTCTACGGATAGAATTATCATTGTGGCGAATCAGCTACCTTTGAAAGCGAAGAGAAGAGAGGATAACAAAGGATGGAGTTTTAGTTGGAATGAGGATTCCTTGCTCTTACAGCTTAAGGATGGATTTCCCGAAGAGATGGAGGTTCTTTATGTTGGGTCTTTGCGCATTGACATTGATCCCGCTGAACAAGATGATGTATCGCAGTATTTACTGGATAAATTCAAATGTGTCCCTACATTTCTACCTCCTGATGTTTTGGCTAAATTTTATGATGGCTTCTGCAAAAGACAGTTATGGCCACTTTTTCATTACAAGTTACCGTTTTCGACTGATAAAAGCCACCGATTTGATCGCACTTTGTGGGAAGCCTATGTTCTGGCAAACAAACTTTTCTTTCAAAAGGTAGTAGAAATAATAAACCCGGAGGATGACTATATTTGGGTTCATGATTACCATTTGATGGTGCTGCCGACTTTTCTTAGAAGGCGTTTTAACAGGGTTAAAATGGGATTTTTCTTGCATAGCCCCTTTCCATCATCAGAGATATATAGGACTCTTCCTGTCAGGGAAGAGATACTGAAAGCTTTACTAAATTCTGATATCATTGGATTCCATACGTTTGACTATGCTCGCCATTTCCTTTCCTGTTGCAGTCGTATGTTGGGTCTAGAGTATCAGTCAAAGAGGGGCTATTTAGGATTGGAATATTATGGAAGGACTATCAGTATTAAGATCATGCCTGTTGGGATTCATATGGGTCGGATTGAATCTGTTATGAAAATGGCGGATGAGGAGTGTAAGGCAAGGGAGCTCAAACAGAAATTTGAAGGGAAAACCATTTTGCTTGGTATTGACGACATGGACATTTTTAAAGGCATAAATTTGAAGATTTTGGCTATGGAGCAGATGCTCAAACAACACCCCAAATGGCAAGGAAGAGCTGTTTTAGTCCAGATAGTTAATCCAGCTAGAGGTAAAGGGATACATGTAGAGGAAGTACTTGCCGAAATACAAGAAAGCTGCACCAGGATCAACAGAGTGTTTGGCCGACCTGGCTATGAACCTATTGTTTTTATTGATAGGGCGGTTCCAATTACTGAAAAAGTTGCCTATCACAGCCTTGCCGAGTGTGTTATTGTCACAGCTGTAAGGGATGGGATGAACCTAACTCCTTATGAATATATAGTTTGTAGACAGGGAATATCTGGTTCTGAATCAAGTTCCAATGTGAATGACCCTAAGAAGAGCATGCTTGTAATATCCGAATTTATTGGGTGTTCTCCATCACTTAGTGGGGCTATCCGTGTCAATCCATGGAATGTTGAAGCAACTGCAGAGGCAATGAATGAGGCCATTTCAATGAGTGATGGAGAGAAGCAGCTTCGGCACGAAAAGCATTATCGGTATGTCAGCACTCATGATGTGGCTTACTGGTCGCGTAGTTTCTTGCAAGACATGGAGAGGGCTTGCACAGACCTTCTTAGAAAAAGATGTTGGGGAATAGGTCTTAGCTTTGGATTTAGGGTTGTGGCACTCGACCCTAACTTTAAAAAACTCTCAATTGATGCTATGGTTTCAGCTTACAAGAGAGCAAGGAGTAGGGCCATTTTGTTGGATTATGATGGTACTGTGATGCCACAAAACTCCATTAATAAGAGTCCAAGTAAGGAGGTCATCTCTCTTTTGGAATCTCTCTGTGCAGACCCCAAAAATGTAGTTTTCATTGTTAGTGGAAGGGGTAGGATTAGCTTAAATGAATGGTTTGCTCAATGTGATAAACTTGGAATTGCTGCAGAACATGGGTATTTCTTGAGGTGGTCCCAGGATGGAGAATGGGAAACTTGTGGTAACTGCTCCGATTTTGGATGGATGCAGATTGCTGAACCAGTAATGAAACTATATACAGAGGCAACTGATGGTTCCAGCATTGAACGAAAGGAAAGTGCTTTGGTATGGCAGTACAGGGATGCAGACCTTGGGTTTGGATCTTCTCAGGCGAAGGAAATGTTGGATCATCTAGAAAGTGTTTTGGCCAATGAGCCTGTTTCCGCAAAGAGTGGCCAGTTTATTGTTGAAGTCAAACCCCAGGACGTGAGCAAAGGCTTAGTAGCAGAAAAGATATTTACGTCGATGACTGAGAGTGGCAAACAGGCTGACTTTGTGCTGTGTGTTGGTGATGATAGATCAGATGAAGACATGTTTGAAATAGTTAGTAGTGCAATTTCAAGAAATATTCTTTCCCCCAATGCTTCTGTATTTGCTTGCACGGTTGGACAAAAGCCAAGCAAAGCAAAGTATTATCTTGATGATACAGCTGAAGTAATAAACATGCTAGAATCTTTGGCCGAAGAATCTGATTCTTCACCCGGCATAATAGAAGATTCTGGGGATTCCTCTTGA 2583 0.4181 MMSRSYTNLLDLASGNFPAMGSGKEFKERRRMPRVMSVPGFVPEVDDDQAVSVSSDNPSTISTDRIIIVANQLPLKAKRREDNKGWSFSWNEDSLLLQLKDGFPEEMEVLYVGSLRIDIDPAEQDDVSQYLLDKFKCVPTFLPPDVLAKFYDGFCKRQLWPLFHYKLPFSTDKSHRFDRTLWEAYVLANKLFFQKVVEIINPEDDYIWVHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIESVMKMADEECKARELKQKFEGKTILLGIDDMDIFKGINLKILAMEQMLKQHPKWQGRAVLVQIVNPARGKGIHVEEVLAEIQESCTRINRVFGRPGYEPIVFIDRAVPITEKVAYHSLAECVIVTAVRDGMNLTPYEYIVCRQGISGSESSSNVNDPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISMSDGEKQLRHEKHYRYVSTHDVAYWSRSFLQDMERACTDLLRKRCWGIGLSFGFRVVALDPNFKKLSIDAMVSAYKRARSRAILLDYDGTVMPQNSINKSPSKEVISLLESLCADPKNVVFIVSGRGRISLNEWFAQCDKLGIAAEHGYFLRWSQDGEWETCGNCSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADLGFGSSQAKEMLDHLESVLANEPVSAKSGQFIVEVKPQDVSKGLVAEKIFTSMTESGKQADFVLCVGDDRSDEDMFEIVSSAISRNILSPNASVFACTVGQKPSKAKYYLDDTAEVINMLESLAEESDSSPGIIEDSGDSS 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03421 860 CDD GT20_TPS 65 548 IPR001830 GO:0003824|GO:0005992
Vivi5g03421 860 CDD HAD_TPP 596 837 - -
Vivi5g03421 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 594 711 - -
Vivi5g03421 860 NCBIfam HAD-IIB family hydrolase 597 801 IPR006379 -
Vivi5g03421 860 FunFam Alpha,alpha-trehalose-phosphate synthase 319 532 - -
Vivi5g03421 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 58 317 - -
Vivi5g03421 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 33 844 IPR001830 GO:0003824|GO:0005992
Vivi5g03421 860 Pfam Trehalose-phosphatase 598 832 IPR003337 GO:0003824|GO:0005992
Vivi5g03421 860 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 724 855 - -
Vivi5g03421 860 Pfam Glycosyltransferase family 20 65 548 IPR001830 GO:0003824|GO:0005992
Vivi5g03421 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 64 552 - -
Vivi5g03421 860 NCBIfam trehalose-phosphatase 592 843 IPR003337 GO:0003824|GO:0005992
Vivi5g03421 860 Gene3D Glycogen Phosphorylase B; 319 532 - -
Vivi5g03421 860 Gene3D Glycogen Phosphorylase B; 58 318 - -
Vivi5g03421 860 SUPERFAMILY HAD-like 595 843 IPR036412 -
Vivi5g03421 860 Gene3D - 724 851 IPR023214 -
Vivi5g03421 860 Gene3D - 594 692 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03421 Vivi-Chr5 125973010 125977993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03421 1 849 Trehalose Biosynthesis Gene Families AT1G06410 76.914 0.0 1370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03421 K16055 - gmx:100800847 1602.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03421 5 125973010 125977993 Vivi5g03421 5 125973010 125977993 ECH