Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03414 ATGTCAGGTGGCCCTATTTCTCAGGATTGGGAACCAGTCGTCATCCGCAAGAAAGCCCCCAACGCCGCCGCCAAAAAGGATGAGAAAGCCGTCAACGCCGCTCGCCGTGCTGGCGCCGATATCGACACCGTTAAGAAATATAATGCTGCTACAAACAAAGCTGCATCTAGCAGCACTTCATTCAACACTAAGAGGCTGGATGAGGATACCGAGAATCTAGCTCATGATCGTGTACCAACTGAACTGAAGAAGGCTATAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAATCATCAATGAAAAGCCTCAAGTGATCCAAGAGTATGAGTCAGGGAAAGCCATTCCAAACCAGCAGATAATTGGCAAGTTGGAAAGAGCCCTTGGAGCTAAACTGCGTGGCAAGAAATGA 426 0.4789 MSGGPISQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGADIDTVKKYNAATNKAASSSTSFNTKRLDEDTENLAHDRVPTELKKAIMQARMDKKLTQSQLAQIINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03414 141 FunFam Multiprotein bridging factor 1 70 141 - -
Vivi5g03414 141 SMART mbf_short4 85 140 IPR001387 -
Vivi5g03414 141 MobiDBLite consensus disorder prediction 53 76 - -
Vivi5g03414 141 SUPERFAMILY lambda repressor-like DNA-binding domains 79 137 IPR010982 GO:0003677
Vivi5g03414 141 ProSiteProfiles Cro/C1-type HTH domain profile. 86 140 IPR001387 -
Vivi5g03414 141 Pfam Multiprotein bridging factor 1 8 78 IPR013729 -
Vivi5g03414 141 Gene3D - 70 141 IPR010982 GO:0003677
Vivi5g03414 141 CDD HTH_XRE 84 134 IPR001387 -
Vivi5g03414 141 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 8 141 - -
Vivi5g03414 141 Pfam Helix-turn-helix 86 136 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03414 Vivi-Chr5 125892413 125896159 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Vivi5g03414 MBF1 1.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03414 K03627 - atri:130817989 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03414 5 125892413 125896159 Vivi5g03414 5 125892413 125896159 ECH