Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03408 ATGGACTCCATCTCCGGAGTTCCGTCTCCCCTCAACACCGCCCCGCCGCGACCTCCGTCGTCATCGCCGTTTCCCGGCCGGGAAGACTGCTGGAGCGAAGACGCTACTTTCACTCTCATCGACGCATGGGGTGAGCGCTACCTAGACCTTAACCGCGGTAACCTTCGCCAGAAGCACTGGCAAGAGGTTGCCGACGCCGTCAACGACCTCCACGCCGCCGGTAACAACAACAAGAAAGCTCGTCGAACCGACGTTCAGTGCAAGAACCGAATCGACACGCTGAAAAAGAAGTATAAGATCGAGAAAGCTAGGGTTTCCGAATCCGACAGCGGTTACCAGAGTTCTTGGCCATTCTTCTCCAGCCTCGACGTCCTCATCGGAAACACTTTTCCGGTAAAGAAACACTCGCCGCCGGTAAGCGAACGAACCACCGTCGCCGTCGTCAAATCTCCACCGTCTCCTCCGGCATGGATAGTCTCTCATCCGGTTGGTCCCCGATCCGGGACACAAAAACGTCCGGCGCAGATGAACAGAGACGACACTTCTTTCCGACGGAATTTCTCAGCCTTTGCAACTGCCGCAGCGGCAGTGGCTAAGGCAGAAAGTGAGGAAACCGAGGAATGGAAGTCGAATAGTGGAAAGAAGAGTGGGAAGAGGGGAAGAGAGAGTGATATGAACATGGAGTGTGGGTACAAACATCTTGCTCAGGCGATAGAGAGGTTTGGTGAAGTATACGAAAGAGTTGAAGCTTCGAAACAGAGACAAATGGTGGAATTGGAAATGCAGAGGATGAAATTTGCAAAGGACTTAGAGTTCCAAAGGATGAAGTTAATCATGGAAACGCAGATTCAGATTCAGAAAATCAAGCGCAGCAAGCGTTGTTCTCCCGGTGTTGCAGACAGTTTCTCATAG 912 0.5252 MDSISGVPSPLNTAPPRPPSSSPFPGREDCWSEDATFTLIDAWGERYLDLNRGNLRQKHWQEVADAVNDLHAAGNNNKKARRTDVQCKNRIDTLKKKYKIEKARVSESDSGYQSSWPFFSSLDVLIGNTFPVKKHSPPVSERTTVAVVKSPPSPPAWIVSHPVGPRSGTQKRPAQMNRDDTSFRRNFSAFATAAAAVAKAESEETEEWKSNSGKKSGKRGRESDMNMECGYKHLAQAIERFGEVYERVEASKQRQMVELEMQRMKFAKDLEFQRMKLIMETQIQIQKIKRSKRCSPGVADSFS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03408 303 Pfam Myb/SANT-like DNA-binding domain 28 123 IPR044822 -
Vivi5g03408 303 Gene3D - 31 100 - -
Vivi5g03408 303 MobiDBLite consensus disorder prediction 201 224 - -
Vivi5g03408 303 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 16 292 IPR044823 -
Vivi5g03408 303 MobiDBLite consensus disorder prediction 156 178 - -
Vivi5g03408 303 MobiDBLite consensus disorder prediction 1 29 - -
Vivi5g03408 303 FunFam trihelix transcription factor ASIL2 31 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03408 Vivi-Chr5 125703369 125705913 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03408 204 290 Trihelix Transcription Factor Family AT3G14180 42.529 6.81e-14 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi5g03408 Myb_DNA-bind_4 7.1e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03408 - - lang:109355153 375.17