Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03389 ATGGAAATGGAGGATTTTGATTGGGGTTATGATATGCTTGGAGATGCCACTAATGGTTTTCAAGTAAACAATGATGTAATGAAAAGTGGCTATGGTTCATCTTTCTCTCTTGTTTTGGATAGAGAAAGAGAAATGCTTGTGAAAGCACCTGCAAAAATGGAACAAAAGGGTGTGTCTACTGAGAGAACTGCAGAAGCTTTGAAGAATCACAGTGATGCAGAAAGAAGAAGAAGAGCTAGAATTAACTCACATCTCGATACACTTCGCAGTGTCATTCCAGGTGCTTTGAAGATGGACAAAGCATCGTTACTCGGTGAAGTTATTCGACATTTAAATGAGGTAAAAAGAACCGCAACACAAGCGTGCGAAGGTTTAATGATACCAAAGGACAACGATGAAATAAGCGTTGAAGAACAAGAATGCGGATTCAATGATTTTCCGTATTCGATTAAAGCGTCACTGTGTTGTGAGTATCAACCTGGTTTGTTGTCTAGTATAAGACAAGCACTAGAGGCTCTTCGTCTAGTAATCATGAAGGCGGATATTGCGACTTTTGGTGGAAGAATGAAGAATGTGTTTGTTGTAATTAGTTGTGAGGAACAGAACTTTTATGATGCTGAATATAGACAGTTTCTTGCTGGTTCTGTTCATCATGCTCTTAAGTCTGTGGTTAGTAGATTTTCTGTTTCACAGGATGTGTTAGGAGCTAGAAAAAGAAGGAGGGTTTCTATATTTAGTTCTTCATCTTTAGAAGATTTCTTATAA 765 0.3804 MEMEDFDWGYDMLGDATNGFQVNNDVMKSGYGSSFSLVLDREREMLVKAPAKMEQKGVSTERTAEALKNHSDAERRRRARINSHLDTLRSVIPGALKMDKASLLGEVIRHLNEVKRTATQACEGLMIPKDNDEISVEEQECGFNDFPYSIKASLCCEYQPGLLSSIRQALEALRLVIMKADIATFGGRMKNVFVVISCEEQNFYDAEYRQFLAGSVHHALKSVVSRFSVSQDVLGARKRRRVSIFSSSSLEDFL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03389 254 MobiDBLite consensus disorder prediction 58 76 - -
Vivi5g03389 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983
Vivi5g03389 254 MobiDBLite consensus disorder prediction 52 76 - -
Vivi5g03389 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 118 IPR036638 GO:0046983
Vivi5g03389 254 CDD ACT_UUR-ACR-like 153 195 - -
Vivi5g03389 254 Gene3D - 59 122 IPR036638 GO:0046983
Vivi5g03389 254 Pfam Helix-loop-helix DNA-binding domain 69 113 IPR011598 GO:0046983
Vivi5g03389 254 SMART finulus 71 120 IPR011598 GO:0046983
Vivi5g03389 254 PANTHER TRANSCRIPTION FACTOR BHLH30 33 246 IPR045847 GO:0003700|GO:0006355
Vivi5g03389 254 CDD bHLH_AtAIG1_like 60 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03389 Vivi-Chr5 125358545 125359699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03389 4 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 36.471 5.80e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi5g03389 HLH 6.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03389 - - aprc:113859663 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03389 5 125358545 125359699 Vivi5g03389 5 125358545 125359699 ECH