Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03375 ATGGTAAAAAGCTGTGAAGAAACAGAAAGAAAAAGAGTAGTGGAATCATTGATTTGGGAAGCAATTTGTAGACAAAAAGATCCTATAAATGGTTCTCTTGGACCATATAAGAAAATTTACAATGAGTATAGAAGATTGTTGCATGAAGTTATGATGCTAAAAGGTCAAACTCAACTATTGCACATGCAAAGTAATCAAGGTTTAATGTCAACTAAACCAATAATAAGCGATTCTAATGGAATGGATTATCATCTTCAGCAGAATAATGGTGTTATGGATGCTGCTGCATTTTATAATGCTTATTATTCACAAGATTTTGATAGTTTGAGGAATGAAGTTGGTATTCCAATTCAGCAACACTCATCACAGGATTTGAAGCAGGTGATGAATTCAATCAGTGAACAATGGGAGCAAATGGAAGAAGGCACTCGGGTTGGCAATCATACCGTGTGA 453 0.3488 MVKSCEETERKRVVESLIWEAICRQKDPINGSLGPYKKIYNEYRRLLHEVMMLKGQTQLLHMQSNQGLMSTKPIISDSNGMDYHLQQNNGVMDAAAFYNAYYSQDFDSLRNEVGIPIQQHSSQDLKQVMNSISEQWEQMEEGTRVGNHTV 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03375 150 ProSiteProfiles LOB domain profile. 1 57 IPR004883 -
Vivi5g03375 150 Pfam Lateral organ boundaries (LOB) domain 1 53 IPR004883 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03375 1 48 AS2 family AT1G06280 45.098 8.32e-09 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi5g03375 LOB 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03375 - - vvo:131605349 308.145