Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03355 ATGTTAACAAAAATGAATGAAGTAGAACTCTCAAATGTTAATTTCCTTCAAAATTCAACTACTAGTGCTTCCATTAATCCTCCTCCTTTGAAGAGAAAAAGAAACCTCCCCGGAAATCCAGATCCTGAAGCTGAAGTTATCGCTTTATCGCCGAAGACTTTAATGGCAACAAACAGATTCTTGTGTGAAACATGTGGGAAGGGTTTTCAAAGAGATCAGAATCTACAACTACATCGACGCGGACATAATCTTCCATGGAAGCTTAAGCAGAGAACAAACAAGGAAATAAAGAAGAGAGTTTATGTCTGTCCTGAGAAGAGTTGTGTTCATCATGATCCTTCAAGAGCACTTGGTGACTTAACTGGGATAAAAAAGCACTTTTGTAGAAAGCACGGTGAAAAGAAGTGGAAGTGCGAGAAGTGCTCAAAACGCTATGCTGTTCAGTCAGATTGGAAAGCTCATTCGAAAACATGTGGTACTAGAGAATACAAATGTGACTGTGGAACTATCTTTTCAAGGAGAGATAGCTTCATAACTCATAGAGCTTTCTGTGATGCCTTAGCAGAAGAAACAGCAAGGGTAAGTGCAGCCTCAGAAATAAACCACAACTCATTAAGGGGTAACATTGGTAATAATTACAACATAATGGGAACATCTTTAGTCCCTAATAACATGTCAACTCATTTTCCTTCAATTTTCAAAACAATTTCATCTCCTGATCATCATCATCATGAAACAACAACCAATCAAACTAGAGGACTCTCCCTTTGGATGAACCAAACATCTCAGCCTCATGACACAATGATAACCACCAATGGAAACAACAATTTGCATGAGATTCATGTTAATCAACATCTTGACTCATCGTCAAGAGGATTAATGTACGGTGGGATCGAGAATCCAAACTCGAATAATTATCAGCTGAATTGGGTTTTTGAAAATAAACTTCCCTCAAATTGTAGCCAAGAGTTAATTACTAGCACAACAACTTCACTTCCACTAGGAAACAATAATGTTAATGTTAAGGATGTTGCTATTCATCATGATGCTACTACAAGCCAACAATTATCTTCCTTGTATAGCTCACAACACCAAATACCATCACATCAAACATCATCATCGGCGAACATGTCAGCTACAGCTTTGTTACAGAAAGCTGCTCAAATTGGAGTAACCTCGACCGACACATCATTCCTTGGAAGCTTAGGTTTGAAATGCAGTGACAATAGTAATATTGATGTGAACAAGTTTGGTGGTGCTGGTTTGTATGGTTCAAGTTCATTACTCATTAGTCTTGGAAATGAGGAAGATCATAACACTACTGCATGTGATTTCTCACAAATGCACCCTTCTAAACGTAGACATGTCCAGAGTGAAGAGAATGGAGGTGGAGGGCAAACTAGAGATTTTCTTGGTGTTGGTGTGCAAACCATTTGTCACCCTTCATCAATCAACGGATGGATTTGA 1467 0.3851 MLTKMNEVELSNVNFLQNSTTSASINPPPLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEIKKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVSAASEINHNSLRGNIGNNYNIMGTSLVPNNMSTHFPSIFKTISSPDHHHHETTTNQTRGLSLWMNQTSQPHDTMITTNGNNNLHEIHVNQHLDSSSRGLMYGGIENPNSNNYQLNWVFENKLPSNCSQELITSTTTSLPLGNNNVNVKDVAIHHDATTSQQLSSLYSSQHQIPSHQTSSSANMSATALLQKAAQIGVTSTDTSFLGSLGLKCSDNSNIDVNKFGGAGLYGSSSLLISLGNEEDHNTTACDFSQMHPSKRRHVQSEENGGGGQTRDFLGVGVQTICHPSSINGWI 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03355 488 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Vivi5g03355 488 FunFam protein indeterminate-domain 12-like 39 107 - -
Vivi5g03355 488 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Vivi5g03355 488 MobiDBLite consensus disorder prediction 445 468 - -
Vivi5g03355 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Vivi5g03355 488 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Vivi5g03355 488 Gene3D Classic Zinc Finger 56 83 - -
Vivi5g03355 488 Gene3D Classic Zinc Finger 94 184 - -
Vivi5g03355 488 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 476 IPR031140 -
Vivi5g03355 488 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03355 Vivi-Chr5 124718961 124722290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03355 24 488 IDZ Gene Family AT1G03840 52.372 1.42e-152 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi5g03355 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03355 K25870 - qsa:O6P43_028858 594.349