Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03353 ATGATTGAGGAAGAAAAAGAAGAAAAATATATAAATATGACTCATTGCAATGAGGTTCAAAATAATCATAGCATCAATGTTGATGGAAGAAAGGACAGCTTAATTAGAACTTGTCTCACATGTGGTCATCATATCAAATGCCAAGATCAGGGTGGTGGAATTAATGACTTACCTGGATTACCTGCTGGAGTGAAGTTTGATCCAACAGATCAAGAGATTCTTGAACATTTGGAAGCAAAAGTGAGGTCTGATATTCATAAACTCCATCCTCTAATTGATGAGTTCATACCTACTCTTGAAGGAGAGAATGGAATTTGCTATACTCATCCAGAGAAATTACCAGGTGTAAGCAAAGATGGTCTAATCCGCCATTTCTTCCACAGACCATCCAAGGCATACACAACAGGAACAAGAAAAAGAAGAAAAGTGCATTCAGATCACGAAGATGGCAGTGAAACCCGTTGGCACAAAACAGGAAAAACAAGACCAATCTACAACAATTCCAAGCTAAAAGGCTACAAAAAAATCCTCGTACTTTACACTAACTATGGAAAGCAAAGAAAGCCAGAGAAAACAAGTTGGGTGATGCATCAATATCATCTAGGGAATGATGAAGAAGAGAAAGAAGGAGAGTTAGTTGTGTCCAAGGTTTTCTATCAAACTCAACCAAGACAATGTGGTGGCAACTCATTGATCATGAAAGAGTCTACTGTGAAGGGTCAAAGTGGGAATAATATTGAGGTAATGAATGGTGAAAAGAGTATTAATAATGGATCATTTGTTGAGTATTATCATTCAAATTTCATATCATTTGATCAAGGGAATCAACATAGATCATCTAGTAATAATGCTCAAGTGATTTCACATTTTGAAGGTGCTCCTATATGA 888 0.3649 MIEEEKEEKYINMTHCNEVQNNHSINVDGRKDSLIRTCLTCGHHIKCQDQGGGINDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDHEDGSETRWHKTGKTRPIYNNSKLKGYKKILVLYTNYGKQRKPEKTSWVMHQYHLGNDEEEKEGELVVSKVFYQTQPRQCGGNSLIMKESTVKGQSGNNIEVMNGEKSINNGSFVEYYHSNFISFDQGNQHRSSSNNAQVISHFEGAPI 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03353 295 Pfam No apical meristem (NAM) protein 61 201 IPR003441 GO:0003677|GO:0006355
Vivi5g03353 295 MobiDBLite consensus disorder prediction 274 295 - -
Vivi5g03353 295 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 31 251 IPR044799 GO:0003700
Vivi5g03353 295 ProSiteProfiles NAC domain profile. 60 220 IPR003441 GO:0003677|GO:0006355
Vivi5g03353 295 MobiDBLite consensus disorder prediction 274 288 - -
Vivi5g03353 295 MobiDBLite consensus disorder prediction 134 161 - -
Vivi5g03353 295 Gene3D NAC domain 69 224 IPR036093 GO:0003677|GO:0006355
Vivi5g03353 295 FunFam NAC domain-containing protein 73 69 224 - -
Vivi5g03353 295 MobiDBLite consensus disorder prediction 139 159 - -
Vivi5g03353 295 SUPERFAMILY NAC domain 56 220 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03353 Vivi-Chr5 124602754 124605223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03353 13 239 NAC Transcription Factor Family AT4G28500 68.201 9.84e-116 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi5g03353 NAM 3.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03353 - - gmx:100797459 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03353 5 124602754 124605223 Vivi5g03353 5 124602754 124605223 ECH