Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03348 ATGGAGGAGGAGAACAAGCTACTGGAAGAGGAGAACAAGGTGAAGCGTAAAATGAAGTCTGCTTCACAGTTGGAGATTCTAGAAAAAGCATATGCTGCGGAGGCGTACCCGTCTGAGGCGTTCAGGGCTGAGTTATCTGTGAAGTTGGGTTTGTCTGATCGTCAGTTACAGATGTGGTTCTGTCACAGGAGACAGAAGGATAGGAAGGCTTCGCCGATTGTTAATAAGGCTGTGGCGCCAATTGGTCATGTGGATGCACAGTATGGGGTGATGGGCTTTACTACGATGGGAGCTGGATTGCCTGCAATGGAAGGCAGTAGTTACCGTGAAGCTCATCAGACATTACAGGAGCTGCGAGCTGTTGCATTGGTGGAAAGACAGTTGGGGGAGACATTAAGAGAGGATGGACCTATTCTTGGGATGGAGTTTGATTCCCTGCCACCCGGTGCATTTGGTGCACCATTAGGAGCAGTGGCAATGGGACAAAACAGCCAATCTGAATGGCCTGTTGAGGCAAAGGTTTATGAACATCTGGATAAGGGCATTTCAAGGACTCTCCATGAATATCAATTTATTCCAGAGCAGCCAACTGTTAAAAATGAGATATACGAGAGAGATACTACATCCGTTCACTTTAGTTCTCTTGATGGTGTTCCACATTCTAGTGCGCTGTCTTTCCTTAACGGGAATGAATCTGCACCTAAGGTATATGGAGTCCAAGGTCAGAAGATACCTGGTCTAAATCTTTTGTCCGAGTCTCAGCATCAGCAAGGTAGGCAGAATCATCTCATGCTTTCTGCTTCAGGAGGGAATGACAATGTTCCACTAAAGAACCCATTTGTTGATGTAACTCTTAATACTCAAAGGGGGGCTCACCAAGTAACTCTGATTAACACCCCTCTAGTGCTATCTGATAGGAGGGTTATCCACGAGGAGGAACTTTCAAGGTTTCAAAGGAAGCGAAAGAATGAAGAGGCTAGATTGCAACGGGAACTTGAAGTACAAGAAAAAAGAATTAGAAAAGAACTTGTAAAACAGGATATTCTAAGGCAGAAGAGAGAGGAGCAAATAAAGAAAGAGATGGAGAGGCAAGAACGTGAAATGCAGAAGGAAAAGGAAAGGTGCCTTAGAGAACAGAAGCGCGAGCAAGAGCGACAGGAAAAGTTTTTGCAGAAGGAATCAATCAGAGCTGAGAAACTGAGACAGAAGGAAGAACTACAGAGGGTGAAGGAGGCGGCAAGGATTAAAGCTGCAGGTGAGAGAGCTATTGCCCGCAGAATGGTCAAAGATGCAATAGACCTTATTGAAGACGAACGTCTGGAACTCATGGAATTAGCTGCATCAAAGAAGGGGCTATCTTCAATACTGGATCTTGACTACGAAACTATGCAAAATCTGGAATTATATGGTGATGGGCCTACTTCCTTCCCACCCAAGTCTGTACAGTTGAAAAGAGCTTTTTCAATTCAACCTTGGGCAGATTCTGACGAGAATGTAGGAGATCTTCTAATGGTTTGGAAGTTCTTGATTACCTTTGCTGATGTTCTTGGAATATGGCCATTTACATTGGATGAGCTTATACAAGCTTTTCATGATTATGACCCTAGGATGTTAGGTGAGATCCATATTGTTCTTCTGAGATCCATTATAAAAGATGTTGAAGATGTTGCAAGAACACCCACTACTGGATTAGGAGCTAACCAAAATAGTGTTCCGGGCTCTGGTGGGGGGCATCCACAGGTAGTTGAAGGGGCATATGCATGGGGTTTTGATATAAAAAATTGGCAGCGGCATTTAAATCCATTAACATGGCCAGAGATTTTGCGACAATTTGCCTTGTCAGCTGGATTTGGGCCTCAATTGAAGAAACAGAATATTGAGCCAGTGCATCCTAGCAACCATGAGGGTAATGATGGTAAAGATATAATTTCTAATCTACGAAATGGAGCTGCTGTTGAAAATGCTGTTGCTATTATGCAAGAGAAAGGTTTAACTAATCCAAGAAGAAATAGGCATCGATTGACGCCTGGAACTGTTAAATATGCTGCATTTCATGTCCTTTCTTTGGAAGGAAGCAGAGGCCTCAATATATTGGAAGTTGCAGACAAGATTCAGAAATCTGGACTCCGTGATCTTACAACTAGCAAAAACCCAGAGGCTTCTATATCTTCTGCTTTGTCTAGGGATACAGAACTATTTGAAAAGACTGCTCCTTCAACATACTGTGTACGTCCTGCATACAGAAAGGACCCAGCTGATTCTGAAGCAATTTATTCATCTGCCAGGGAAAGAATCAGGATATTCAAAAGCGGACTCGTGGGTGCAGAAGAAGCTGATGATGGTGAAAGGGATGAAGATTGTGAAACTGATGTGGCAAAAGATCCTGAGACTGATAAATTAAGAGTTCAAACAAATATGAAAAAGGAGGTCTCAAGTCATGAGGAATTTAATGCAAACACTATTGTGAGAAGTGGGAAGGACAATGCTGAGGTTTTGCAAACTCCTGATAGTTGCCATGAGAAAGTTCATGAGGGGTTAGGATCAACTGCTGATGGAGGCTTTAATGAACAGAAAGATGTTCGTAGATCTAGTGAAATTAATGGGGTTGCCGATCCTATTCTAAAAGGCATAGATGTTGATGAAAACACTCTTGGTGAACCATGGGTACAAGGGCTTATGGAGGGAGAGTATTCAGATCTTAGTGTAGAGGAGCGTCTTCACGCTCTTGTTGCTTTGATTACTGTGGCAATTGAAGGGAATTCTATCCGTGTTGTACTTGAGGAACGTCTAGAAGCCGCAAATGCTTTAAAGAAGCAGATGTGGGCTGAGGCACAACTTGATAAACGACGTATTAAAGAGGATTATCTTGTTAAAATGCAATCTTTCTCCAATTTGGGAAACAAGAGTGAACCAGCTGTTACATTTCCATCAGTAGGGGATAAAGAGTGCCCAGTGCATACTGTTGAAGTTGAAAATGAGAAGGCTTTACTCACTCCCTGCGACCAGCATGAACAGATAAATTCAATGCAGGAAAATCAAAATCTTATGCCGAATTCGTTAGAAGCGAACTTGCAGAAGCAAGATTGTTCCACTGGCCAAGATAATTATTCTCTCCAACAATCTATTTACGCTGCTGAAAAATCAAGGTCGAGTTTTAAATCATATATTGGTCAATTGGGGGAACAAATTTTCATGCATAGATCATTGCCTCTTGGTTTGGATCGAAGACGAAACCGATACTGGCAGTTCATTACTTCTGCTTCTCTAAGCGATCCAGGTTGTGGCAGGATTTTTATGGAATTGCATGATGGCTGTTGGAAGCTGATTGATTCTGAAGAGGGTTTTGATGCTCTATTGGCATCATTGGATGTACGTGGAATCAGGGAGTCCCACTTGCATGCGACGTTGCAAAGAATTGAGATGTCCTTCAAAGAATCTGTTAGAAGAAATGTTCAAAATGACATGAAAATGCAAAATGGAGACACTGTCGAAAAACTCAAGACAGAGGCAGTTAAAATGGTCACAGACCAAGATTGCAGTACTAATATTTACCGTCCCACTTCTGTCTGCATGGATGATTTGAACACATCAGTGGCCTCGACATCTTTTACGGTTCAGCTTGGGAGAAATGAAGTTGAAGACAAAGATGCTTATATGAGATATTGGGACTTTGAGAAATGGATGCTAAAGGAATGTCTAAATAGCTCAGTATCATGTGCAATGAAGTTTGGGAAGAAAAGGTGCAAAGAACTACTTCTCATGTGTGACTTGTGTCATCATGTCTATTTCTGTAGAGGAACACCATGTCCTTCATGCCATAGAACTTTCAGTATCAATCAGGGAAATTCTAGTTCTTTTGAACATATTGCTCGTTCTGAAGACAAGATGAAGACCGACACTCATTTTTTTCTTGATTCATCCTCTTTGCCATTGAGAATGAGGTTGCTCAAAGTCCTCTTGTCAGTTGTTGAGGCAACTCTTCCTCAAGAAGCTCTTCAAACTTATTGGACAGAGAGGTACAGAAAGTCTTGGAATTCAAAGCTGGAAGCTTCCTCATCGACTGAAGATATTCTGCAGATGTTGACTGCATTGGAATGTGCTATAAAAAGGGAGTTTTTGGCTTCAGACTATGAAACTACCAGTGAGCTGTTAGGTTCTGTTTGCTCTTCTGTATGTCGTCCTAATGATATCATTCGTGGGGAAAGGATACCTGTGCTTCCATGGGTGCCATATACAACTGCTGCTGTGACTCTAAGGCTCATGGAACTCGATGCATGCATATTTTACACTTCACAACAAAAGCTGGAGTCGGAGAAGGATAAACAAATTGGGGTTGTTATGAAGCTTCCATCAAAATCTGTTGCTGCTAAAATTTCCTACAACGCATGTGCGATTGAATCTTCATTTCAGACTAAGCATACTGTAGAGAACTGGGGTGCTCTTGGTGCTGGTCTTGAGAGCTACAGCAGAGGACAAAGGACTCGACAAGGCCGCAGTGACTCTCATGGTCAAAGATCACAAGGAAGAGTTGCTAGTTCAAGACCCACTTCCAGAAAGAGAAGTACTACATCTAACAGCAGGAGAATAGGAAAATTACATGGATGGAAAGGGACACTGAACGGACAAGGACGCGTTCGGGGTCGGAGGAGCATTAGAAGTAGGCAGAAACCAGCAGCCAAGATGAATGTGATTAATGATGAGAGAGATACCCCAAAAGACATCATGGAGGAAACACTAATCTTTGTCAGAGAGGAAATTAATGAAGGTGAAACAGAAGCCAATGTTCTAAATGCTAGCAATTCGGAAAGATCAGGCTACGAAGGTGATCTTTATCGAGCAACAGGAGACGAAGTGGATATGGATGATGATGTCAATGACGATGACATTGAAGATGGGCAGGCAGATCTTATAACTGGAGGGAACTCAAACACAGGGTACAGCAGAGAAGAAAATGAAGAAAAAACCGAGGATCCAGATGGTGTTGGTTCTACCTCATTAGATTACAGTGATTAA 5013 0.4237 MEEENKLLEEENKVKRKMKSASQLEILEKAYAAEAYPSEAFRAELSVKLGLSDRQLQMWFCHRRQKDRKASPIVNKAVAPIGHVDAQYGVMGFTTMGAGLPAMEGSSYREAHQTLQELRAVALVERQLGETLREDGPILGMEFDSLPPGAFGAPLGAVAMGQNSQSEWPVEAKVYEHLDKGISRTLHEYQFIPEQPTVKNEIYERDTTSVHFSSLDGVPHSSALSFLNGNESAPKVYGVQGQKIPGLNLLSESQHQQGRQNHLMLSASGGNDNVPLKNPFVDVTLNTQRGAHQVTLINTPLVLSDRRVIHEEELSRFQRKRKNEEARLQRELEVQEKRIRKELVKQDILRQKREEQIKKEMERQEREMQKEKERCLREQKREQERQEKFLQKESIRAEKLRQKEELQRVKEAARIKAAGERAIARRMVKDAIDLIEDERLELMELAASKKGLSSILDLDYETMQNLELYGDGPTSFPPKSVQLKRAFSIQPWADSDENVGDLLMVWKFLITFADVLGIWPFTLDELIQAFHDYDPRMLGEIHIVLLRSIIKDVEDVARTPTTGLGANQNSVPGSGGGHPQVVEGAYAWGFDIKNWQRHLNPLTWPEILRQFALSAGFGPQLKKQNIEPVHPSNHEGNDGKDIISNLRNGAAVENAVAIMQEKGLTNPRRNRHRLTPGTVKYAAFHVLSLEGSRGLNILEVADKIQKSGLRDLTTSKNPEASISSALSRDTELFEKTAPSTYCVRPAYRKDPADSEAIYSSARERIRIFKSGLVGAEEADDGERDEDCETDVAKDPETDKLRVQTNMKKEVSSHEEFNANTIVRSGKDNAEVLQTPDSCHEKVHEGLGSTADGGFNEQKDVRRSSEINGVADPILKGIDVDENTLGEPWVQGLMEGEYSDLSVEERLHALVALITVAIEGNSIRVVLEERLEAANALKKQMWAEAQLDKRRIKEDYLVKMQSFSNLGNKSEPAVTFPSVGDKECPVHTVEVENEKALLTPCDQHEQINSMQENQNLMPNSLEANLQKQDCSTGQDNYSLQQSIYAAEKSRSSFKSYIGQLGEQIFMHRSLPLGLDRRRNRYWQFITSASLSDPGCGRIFMELHDGCWKLIDSEEGFDALLASLDVRGIRESHLHATLQRIEMSFKESVRRNVQNDMKMQNGDTVEKLKTEAVKMVTDQDCSTNIYRPTSVCMDDLNTSVASTSFTVQLGRNEVEDKDAYMRYWDFEKWMLKECLNSSVSCAMKFGKKRCKELLLMCDLCHHVYFCRGTPCPSCHRTFSINQGNSSSFEHIARSEDKMKTDTHFFLDSSSLPLRMRLLKVLLSVVEATLPQEALQTYWTERYRKSWNSKLEASSSTEDILQMLTALECAIKREFLASDYETTSELLGSVCSSVCRPNDIIRGERIPVLPWVPYTTAAVTLRLMELDACIFYTSQQKLESEKDKQIGVVMKLPSKSVAAKISYNACAIESSFQTKHTVENWGALGAGLESYSRGQRTRQGRSDSHGQRSQGRVASSRPTSRKRSTTSNSRRIGKLHGWKGTLNGQGRVRGRRSIRSRQKPAAKMNVINDERDTPKDIMEETLIFVREEINEGETEANVLNASNSERSGYEGDLYRATGDEVDMDDDVNDDDIEDGQADLITGGNSNTGYSREENEEKTEDPDGVGSTSLDYSD 1670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03348 1670 Pfam DDT domain 497 552 IPR018501 -
Vivi5g03348 1670 Pfam Homeodomain 15 69 IPR001356 GO:0003677
Vivi5g03348 1670 SMART HOX_1 12 74 IPR001356 GO:0003677
Vivi5g03348 1670 Coils Coil 307 345 - -
Vivi5g03348 1670 ProSiteProfiles HARE-type HTH domain profile. 677 746 IPR007759 GO:0006355
Vivi5g03348 1670 SMART testlast3 496 555 IPR018501 -
Vivi5g03348 1670 Coils Coil 1 21 - -
Vivi5g03348 1670 ProSiteProfiles 'Homeobox' domain profile. 10 70 IPR001356 GO:0003677
Vivi5g03348 1670 SUPERFAMILY Homeodomain-like 12 69 IPR009057 -
Vivi5g03348 1670 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1067 1139 IPR028941 -
Vivi5g03348 1670 Coils Coil 351 416 - -
Vivi5g03348 1670 MobiDBLite consensus disorder prediction 1489 1559 - -
Vivi5g03348 1670 Gene3D - 8 73 - -
Vivi5g03348 1670 MobiDBLite consensus disorder prediction 1592 1670 - -
Vivi5g03348 1670 MobiDBLite consensus disorder prediction 1503 1529 - -
Vivi5g03348 1670 Pfam HB1, ASXL, restriction endonuclease HTH domain 677 744 IPR007759 GO:0006355
Vivi5g03348 1670 CDD homeodomain 15 69 IPR001356 GO:0003677
Vivi5g03348 1670 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 886 927 IPR028942 -
Vivi5g03348 1670 ProSiteProfiles DDT domain profile. 496 555 IPR018501 -
Vivi5g03348 1670 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 104 1658 IPR044977 GO:0006357
Vivi5g03348 1670 MobiDBLite consensus disorder prediction 1619 1633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03348 Vivi-Chr5 124511394 124526188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03348 11 1442 Homeobox Transcription Factor Family AT5G44180 49.328 0.0 1282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vivi5g03348 WSD 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03348 - - gmx:100797480 2142.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03348 5 124511394 124526188 Vivi5g03348 5 124511394 124526188 ECH
Vivi5g04051 5 136556134 136565923 Vivi5g03348 5 124511394 124526188 PCT