Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03346 ATGGGTGTAGACTACTACAAAATCTTGCAGGTTGATAAGAACGCCAAAGACGAAGAATTGAAAAAGGCTTACAGAAAACTTGCCATGAAATGGCACCCTGATAAAAACCCAACCAACAAGAAAGATGCAGAAGCTAAATTCAAGCAAATTTCTGAAGCTTATGAGGTACTTAGTGATCCTGAGAAGAGAGCAATCTATGATCAATATGGGGAAGAGGGTTTAAAGGGTCAAGTTCCTCCTTCTGATGCTGGTAGTGGTGGTGGAACTAGTTTCTATTCCACTGGAGATATTCCTGGATCGTTTCGGTTTAATCCGAGGAATGCAGATGATATTTTTGCTGAGTTTTTTGGATTTTCAAGCCCATTTGGTGGCATGGGTGGAAGAAGTGGGGGTGGAGGTGGGATGAGATCTAGGTTCCCTGGTGGAATGTTTGGTGATGATATGTTTGGATCATTTGGGGAAGGAGGAGGAATGCATATGAATCAAGGGGTCTCGCGAAAAGCTCCTGCCATTGAGAACAAGTTGAGTTGCACTCTTGAGGAGATTTATAAAGGAACTACAAAGAAGATGAAGATCTCTAGAGAAATTGCTGATGCCAGTGGCAAAACCATGCCAGTGGAAGAGATATTGACCATAACTGTGAAGCCAGGTTGGAAGAAAGGCACAAAGATCACCTTCCCAGAGAAGGGCAACGAACAGCCGAATGTAACCGCTGCAGATCTTGTATTTGTGATTGACGAAAGGCCACACAGCGTGTTCGCTCGCGAAGGAAACGACCTGATTGTGACTCAGAAGATATCTCTTGTGGAGGCCTTAACTGGTTATACAGTGCACCTCACTACATTGGATGGTAGAAACTTGAGCATACCAATCAACAATGTTATTCATCCTAACTATGAGGAGGTTGTTCCAAAAGAAGGAATGCCACTACCTAAGGATCCCTCGAAGAAGGGCAATTTGAGGATAAAGTTTAACATCAAGTTCCCTAATAGGCTCACTGATGAACAGAAAGCAGGAGTTAGGAAACTCTTGGGTGCCTCACTCTGA 1047 0.4355 MGVDYYKILQVDKNAKDEELKKAYRKLAMKWHPDKNPTNKKDAEAKFKQISEAYEVLSDPEKRAIYDQYGEEGLKGQVPPSDAGSGGGTSFYSTGDIPGSFRFNPRNADDIFAEFFGFSSPFGGMGGRSGGGGGMRSRFPGGMFGDDMFGSFGEGGGMHMNQGVSRKAPAIENKLSCTLEEIYKGTTKKMKISREIADASGKTMPVEEILTITVKPGWKKGTKITFPEKGNEQPNVTAADLVFVIDERPHSVFAREGNDLIVTQKISLVEALTGYTVHLTTLDGRNLSIPINNVIHPNYEEVVPKEGMPLPKDPSKKGNLRIKFNIKFPNRLTDEQKAGVRKLLGASL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03346 348 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vivi5g03346 348 Gene3D - 250 330 - -
Vivi5g03346 348 CDD DnaJ 4 59 IPR001623 -
Vivi5g03346 348 Pfam DnaJ domain 4 67 IPR001623 -
Vivi5g03346 348 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 344 - -
Vivi5g03346 348 FunFam DnaJ subfamily B member 13 250 330 - -
Vivi5g03346 348 Pfam DnaJ C terminal domain 171 329 IPR002939 -
Vivi5g03346 348 Gene3D DnaJ domain 3 128 IPR036869 -
Vivi5g03346 348 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vivi5g03346 348 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vivi5g03346 348 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vivi5g03346 348 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vivi5g03346 348 Gene3D - 169 248 - -
Vivi5g03346 348 SUPERFAMILY HSP40/DnaJ peptide-binding domain 166 260 IPR008971 GO:0006457|GO:0051082
Vivi5g03346 348 FunFam Dnaj homolog subfamily b member 167 248 - -
Vivi5g03346 348 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vivi5g03346 348 FunFam DnaJ subfamily B member 13 3 126 - -
Vivi5g03346 348 SMART dnaj_3 3 62 IPR001623 -
Vivi5g03346 348 SUPERFAMILY HSP40/DnaJ peptide-binding domain 252 338 IPR008971 GO:0006457|GO:0051082
Vivi5g03346 348 CDD DnaJ_C 171 332 - -
Vivi5g03346 348 SUPERFAMILY Chaperone J-domain 3 127 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03346 Vivi-Chr5 124506627 124508502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03346 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 7.91e-10 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03346 5 124506627 124508502 Vivi5g03346 5 124506627 124508502 ECH