Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03339 ATGCTTGCGGTTTCACCATTGAGGAGCATCAACAAAGATGAAAACCAAGAAGGAATGGAGAGTACTTCAATTGGAACCTGCGAATTTAGTGACGGAAATTTATTGGAAAGCGTTAACTTTGATGATTTCTTTGTTGGCATCAACATGGAAGGAGATATCTTGCCGGATTTGGATATGGATTCAGAGATTTTCGCTGAGTTCTCCGTCAGTTACGGAGAGGAATCAGAGATAAACTCATCCGCTCTCAAGAAAGCGGATGAAAAGAATCATTCTACAGAAGAAGATAAAATAGGTTCTTCTCTGAGTGGTCAAGGTTCGGAGGAGATATTAAGCAAGAGAGATGAATCTGTTGTTGTGAATCCATTGCCGAAAAATGGTGAAAGAAAAGGAAGAAAATCGTCGAGTCAATCTAAGAATCCTCAAGGGAAGAAAAAAGTCAAGGTGGATTGGACACCAGAATTGCACAGGAGATTTGTGCAAGCTGTGGAACAATTAGGATTGGATAAGGCAGTGCCTTCAAGGATTTTGGAGATAATGGGAATTGATTGTCTCACTCGCCATAACATTGCCAGCCATCTTCAGAAATATAGGTCCCATAGAAAACATGTGTTAGCGCGTGAAGCAGAAGCAGCAAACTGGAATCAAAGAAGAAATGTGTCATGGTCAACTGCTGTAGCAGCACCCACCATGGGTTTTCCTCCTCCTCCCATTATTCCATTGCACCATGTTAGATCCTTACATGTATGGGGACATCCTTCAATGGATCAATCATTTATGCATATGTGGCCGAAGCCGCAGCCACAGCCGCAGCCTCTCTCATGGCCCCCAACGCCACCTCAAGACCCTTCATTTTGGCTTTCTCAACACCAACAGAGATCATTTGGATGTCAACTCCCCAGCAACCCACCGCATGGTATGTACAAAGCGGATCACGGCATTGCCGCTACTGGTCCTGCTTCTGGTCCCGGTCCCTTCTTCGACTTCCAGCCGTCAAATGAGAGTATAGATGCAGCTATTGGAGACGTTTTATCAAAACCATGGTTGCCGCTACCACTTGGACTTAAACCTCCAGGACATGACAGCGTAATGAGTGAATTACAAAGACAAGGAATTTCAAACATTCCACCTTCGTGA 1134 0.4436 MLAVSPLRSINKDENQEGMESTSIGTCEFSDGNLLESVNFDDFFVGINMEGDILPDLDMDSEIFAEFSVSYGEESEINSSALKKADEKNHSTEEDKIGSSLSGQGSEEILSKRDESVVVNPLPKNGERKGRKSSSQSKNPQGKKKVKVDWTPELHRRFVQAVEQLGLDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHVLAREAEAANWNQRRNVSWSTAVAAPTMGFPPPPIIPLHHVRSLHVWGHPSMDQSFMHMWPKPQPQPQPLSWPPTPPQDPSFWLSQHQQRSFGCQLPSNPPHGMYKADHGIAATGPASGPGPFFDFQPSNESIDAAIGDVLSKPWLPLPLGLKPPGHDSVMSELQRQGISNIPPS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03339 377 Pfam Myb-like DNA-binding domain 148 197 IPR001005 -
Vivi5g03339 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 142 201 IPR017930 -
Vivi5g03339 377 SUPERFAMILY Homeodomain-like 144 202 IPR009057 -
Vivi5g03339 377 MobiDBLite consensus disorder prediction 9 25 - -
Vivi5g03339 377 FunFam Two-component response regulator 141 204 - -
Vivi5g03339 377 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 377 IPR044825 GO:0003700|GO:0045893
Vivi5g03339 377 MobiDBLite consensus disorder prediction 80 95 - -
Vivi5g03339 377 NCBIfam myb-like DNA-binding domain, SHAQKYF class 145 199 IPR006447 GO:0003677
Vivi5g03339 377 Gene3D - 142 203 - -
Vivi5g03339 377 MobiDBLite consensus disorder prediction 356 377 - -
Vivi5g03339 377 MobiDBLite consensus disorder prediction 1 25 - -
Vivi5g03339 377 MobiDBLite consensus disorder prediction 80 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03339 Vivi-Chr5 124459813 124462169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03339 22 336 G2-like Transcription Factor Family AT5G44190 40.058 5.67e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi5g03339 Myb_DNA-binding 1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03339 - - vvo:131602346 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03339 5 124459813 124462169 Vivi2g07003 2 211840941 211844817 PCT