Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03329 ATGGTTATGAAAGCAAAGAATGCCAATCTCAAGATCAAAAACAATAATGCAACCGAGATTCATTTCAGAGGCGTGAGAAAACGACCGTGGGGCCGTTACGCCGCCGAGATCAGAGATCCCGGCAAGAAAAGCCGCGTCTGGCTCGGTACCTTCGACACCGCAGAGGAAGCCGCTAGAGCCTACGACGCCGCCGCTCGTCAGTTCCGTGGTTCGAAAGCGAAAACCAACTTCCCGCCTCCTTCCGATAACAAAGAAAACAACGTTAACATCAACAACAATCAGAGTCCCAGCCAGAGCAGCACCGTTGAGTCATCTACGCCTGAGCGTGCTCTCACGCGCTCTCGTGAAGTTCCGGTTGCTGGCGTCATGGATCGTTTTCCGTTTCTCTCGATCCAGCAGCAAATCAGGCCGTTTCCCGGCGCTGCCGCTGGTGCTGTTAATGGAATGGTAACAACTGCTGTGAACCCGGTTTTCTTTTATGATCCGTCTGGTCGCCCTGAGTTTATGAACCAGCGGTTTTCAACTAGGTTTGAACCGGGTCCGGTTGAGTTTAACATCGGGTTTGGCGGTAGTGGTGGGGTTCAGAGTGATTCGGATTCGTCTTCTGTTGTTGATTATCAGCCAAAGAGAGCTCTCAATCTTGATCTGAACTTGGCTCCACCAATGGATGTTTAA 675 0.5126 MVMKAKNANLKIKNNNATEIHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGSKAKTNFPPPSDNKENNVNINNNQSPSQSSTVESSTPERALTRSREVPVAGVMDRFPFLSIQQQIRPFPGAAAGAVNGMVTTAVNPVFFYDPSGRPEFMNQRFSTRFEPGPVEFNIGFGGSGGVQSDSDSSSVVDYQPKRALNLDLNLAPPMDV 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03329 224 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Vivi5g03329 224 MobiDBLite consensus disorder prediction 74 108 - -
Vivi5g03329 224 FunFam Ethylene-responsive transcription factor 2 21 79 - -
Vivi5g03329 224 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Vivi5g03329 224 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Vivi5g03329 224 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Vivi5g03329 224 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Vivi5g03329 224 SUPERFAMILY DNA-binding domain 21 78 IPR016177 GO:0003677
Vivi5g03329 224 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 204 - -
Vivi5g03329 224 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Vivi5g03329 224 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Vivi5g03329 224 MobiDBLite consensus disorder prediction 70 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03329 Vivi-Chr5 124335030 124335979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03329 19 222 AP2-EREBP Transcription Factor Family AT5G44210 46.860 1.15e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi5g03329 AP2 2.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03329 K09286 - qsu:112001675 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03329 5 124335030 124335979 Vivi5g03329 5 124335030 124335979 ECH
Vivi3g02313 3 38522741 38523777 Vivi5g03329 5 124335030 124335979 ECH