Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03327 ATGAGCAGTGTACTTTGTGAAGAGCAACAAAAGCTTCTTCTTAACCTCAAAAAATCTCTCACTATGAGAGACAACATTATCGACAACATCCCACCAAGAAAGCTCCTCACCCGCCGACAATCCACCAACACCTCCGCCGACATGTTTTCCGAGGAAGATCCCTATTCCTCCGACCACTTCCGCATGTACGAGTTCAAAATCCGCCGATGCACACGCAGCCGCAGCCACGACTGGACCGACTGTCCCTTCGCTCACCCCGGCGAAAAGGCTCGCCGCCGCGACCCTCTCCGGTTTCAATATTCCGGTGAGGTTTGTCCTGACTACCGCCGCGGAAACTGCGACCGCGGCGACGCGTGTGAATTTTCACACGGCGTTTTTGAGAGCTGGTTGCACCCTTCGAGATACAGAACTGAAGCGTGTAAAGATGGTAAGAATTGTAAGAGGAAGATTTGCTTTTTTGCTCATACACCCCGTCAACTCAGGGTTTTGCTTTTGCCACCTCCTCCTTCGCCTCCTCCTCAGAACAACGTTAAGAACTGTTGTTCTTTTTGTCATTGCTGTTCTAATTCTTCTTCTTCTTCACCCACTTCAACTTTGTTGAGTGGACCTTATTTTTCTTCTGCGAATTCGCCACCTTTGTCGCCTTTGTCGAATTCAAATCCTAAAGATGTGCATGTTCTTAGCGAGCTTATTCGATCTATGGAGAGTTTCAATTTTGGTGGTGATGATTCTCCTGTTTCTGCTGGAAAATATTATAGTTCAAGTGGTAGTACTAGTAGCAAGTTTTTGAGGGAAGAACAAAGGATTAACGTTGTTGATGATGATGTTAGTGCCAACCCAGATTTTGGGTGGGTGAATGAGTTGCTCATGTAG 873 0.4696 MSSVLCEEQQKLLLNLKKSLTMRDNIIDNIPPRKLLTRRQSTNTSADMFSEEDPYSSDHFRMYEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPLRFQYSGEVCPDYRRGNCDRGDACEFSHGVFESWLHPSRYRTEACKDGKNCKRKICFFAHTPRQLRVLLLPPPPSPPPQNNVKNCCSFCHCCSNSSSSSPTSTLLSGPYFSSANSPPLSPLSNSNPKDVHVLSELIRSMESFNFGGDDSPVSAGKYYSSSGSTSSKFLREEQRINVVDDDVSANPDFGWVNELLM 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03327 290 SUPERFAMILY CCCH zinc finger 99 127 IPR036855 GO:0046872
Vivi5g03327 290 ProSiteProfiles Zinc finger C3H1-type profile. 99 126 IPR000571 GO:0046872
Vivi5g03327 290 Gene3D - 97 163 - -
Vivi5g03327 290 PANTHER UNKEMPT FAMILY MEMBER 49 252 IPR045234 -
Vivi5g03327 290 FunFam Zinc finger CCCH domain-containing protein 100 162 - -
Vivi5g03327 290 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 124 IPR000571 GO:0046872
Vivi5g03327 290 SMART c3hfinal6 99 125 IPR000571 GO:0046872
Vivi5g03327 290 SMART c3hfinal6 134 157 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03327 Vivi-Chr5 124283766 124285011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03327 55 161 C2H2 Transcription Factor Family AT5G07500 66.355 2.68e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi5g03327 zf-CCCH 1.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03327 K23047 - tpra:123913611 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03327 5 124283766 124285011 Vivi5g03327 5 124283766 124285011 ECH