Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03320 ATGTCGCTGCAAACTCTGAAGGAAACACTCAGACACTGCACAACTCAACAATCACAACCATCTTCTTCTTCCTCCCAATCCAGTTCCATTCTCCGCGACTTCGATTCCCATTTCCCAATCCGTAGAAAACCCCCTAAATCCTCTCTCGCCCACCAGCTTCGCCTCCTTCAGGACCCGGACGACCCACTCTTTAACCCTCACGACTTCCTTTCACAACAAAACCAATCCAAACCCCAACAACAACAGCAACAAGTTCAACTAGAAGAAAAAGAAGAAGATGATGACGAAGAAGAAGAAGAGCCCGAGACAAAGAGGGTGAAATTCAGTTCAGCCAAAGCGTCTCAGTTTCAATTCGATCATACTGGACCCTTTGAGCCTTTGCTCTTGTCTTCTGACGGAGAATTTCCTTTAGTTCAGGTTCCTGCATCTATAAACTGCAGACTGCTTGAGCATCAGAGAGTGGGAGTGAAGTTTCTGTATGATTTGTACAAGAAGAATCATGGAGGCATTCTTGGAGATGACATGGGTCTTGGAAAGACAATTCAAACAATAGCATTTCTTGCTGCCATATTTGGTAAAGAAGGAGAGTCTGTTCTTCGTGAGAAACAAGTGGAGAAAAGAGACCCTGTATTAATAATTTGCCCATCATCCGTTATTCAAAACTGGGAGAGTGAATTTTCTAAGTGGTCCAACTTCAGTGTTTCCATTTATCACGGTGCAAACCGCGATTTGATATATGATAAATTGGAAGCAAATGGAGTGGAGGTACTTATTACCAGTTTTGACACTTATAGGATTCATGGCAACACCTCTTTGTCAAGTATCCACTGGAACATTGTGATTATTGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTGCGACGATATGGTCTTACTGGGACTGTAATGCAAAATAAGATCTTAGAATTGTTCAATCTCTTTGATTTAGTTGCACCTGGATCCCTTGGAACACGTGAACACTTCCGTGAGTTTTATGATGAACCCCTTAAGCATGGTCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTTGTGGTTCTTAATAAATATATGTTAAGAAGGACAAAGGAAGAGACCATAGGGCATCTTATGATGGGGAAGGAAGATAACGCTGTGTTTTGTGCAATGAGTGATTTGCAAAAACGTGTTTATAGGAGAATGATCCAGCTTCCTGACATTCAGTGCCTTATAAATAAAGACCTGCCTTGTAGTTGTGGTAGCCCTCTTACTCAAGTTGAGTGTTGCAAAAGGATAGTACCAGATGGAGCTATGTGGCCTTACCTTCACAAAGATAACCCCGATGGATGTGATTCATGCCCCTTTTGCCTTGTACTTCCATGCCTTGTCAAGCTACAACAGATTAGCAATCACCTCGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGACAAACAAATTAAAGATGCAAAGTTTGCTGCTGCTGTCTATGGCCCAGACATTGACTTAGTTGGCGGGAGCACGCAGAATGAGAGTTTCATGGGTCTAAGTGATGCCGAACATTGTGGCAAAATGCGAGCACTTGAAAAACTATTGTTGTCATGGTTTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTATCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCAACTAATTTACGTCAGTCTCTGGTGGATGATTTCAACTCCAGTCCTAGCAAACAAGTGTTCCTGATATCTACTCGTGCTGGGGGGCTTGGATTGAACCTTGTCAGTGCGAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCTCAAGACAGGTCTTTTCGATATGGTCAGAGACGACATGTTGTGGTATTTCGTCTTCTCGCAGCTGGTTCACTTGAAGAACTAGTTTATTCTCGTCAGATTTACAAGCAGCAGCTCTCAAACATCGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGATTGTAAGGAATTTAAAGGAGAGCTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGATAAACTGTTTACCAGCGAAATAGTTGAACTGCATGAGACGAGTAAAAAAGACGGGCTAGAAACAGAACATGAAAAAGTAAAAATGTCAGAAGAAACTGGTTTATTAGCATCAGATTCTGAAACCAGATTATGTGCTGAATCTACGGCTGCTTCAACTAGTAAACCAGATATTGAATTTGAAGACCTCGGTATTGTTTACGCTCACCGCAACGAAGACATTGTCAACTCCCGACCAGGGCAATTATCTACCAGCGGTGCCCCTTCAAATGATAGCTTAAGCAAGTCAGACATCTCTTTAGTCCATCAAAGAAAAAAACCAGATTGTGTACCCAAAAAACAGAAAATTCCTTTGATTGATGAAAGGAAGAGAGCCGAATTTAGCCTCCTTGCAGAGTCTATGGGCATGGGAGAGCTTACATTTAGCAAATGGTTACTATCTGCAACTCCAGTAGAGAGAGAAAAAGTGCTTATAAACTACAACAAGAAAAAGAAAAAGCTTAAAGGTTGA 2664 0.4137 MSLQTLKETLRHCTTQQSQPSSSSSQSSSILRDFDSHFPIRRKPPKSSLAHQLRLLQDPDDPLFNPHDFLSQQNQSKPQQQQQQVQLEEKEEDDDEEEEEPETKRVKFSSAKASQFQFDHTGPFEPLLLSSDGEFPLVQVPASINCRLLEHQRVGVKFLYDLYKKNHGGILGDDMGLGKTIQTIAFLAAIFGKEGESVLREKQVEKRDPVLIICPSSVIQNWESEFSKWSNFSVSIYHGANRDLIYDKLEANGVEVLITSFDTYRIHGNTSLSSIHWNIVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTVMQNKILELFNLFDLVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVVVLNKYMLRRTKEETIGHLMMGKEDNAVFCAMSDLQKRVYRRMIQLPDIQCLINKDLPCSCGSPLTQVECCKRIVPDGAMWPYLHKDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQIKDAKFAAAVYGPDIDLVGGSTQNESFMGLSDAEHCGKMRALEKLLLSWFSHGDKVLLFSYSVRMLDILEKFIIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRYGQRRHVVVFRLLAAGSLEELVYSRQIYKQQLSNIAVSGKMEKRYFEGVQDCKEFKGELFGICNLFRDLSDKLFTSEIVELHETSKKDGLETEHEKVKMSEETGLLASDSETRLCAESTAASTSKPDIEFEDLGIVYAHRNEDIVNSRPGQLSTSGAPSNDSLSKSDISLVHQRKKPDCVPKKQKIPLIDERKRAEFSLLAESMGMGELTFSKWLLSATPVEREKVLINYNKKKKKLKG 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03320 887 Gene3D - 129 381 IPR038718 -
Vivi5g03320 887 Coils Coil 80 100 - -
Vivi5g03320 887 CDD SF2_C_SNF 535 661 - -
Vivi5g03320 887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 703 IPR027417 -
Vivi5g03320 887 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 332 IPR014001 -
Vivi5g03320 887 MobiDBLite consensus disorder prediction 794 813 - -
Vivi5g03320 887 SMART ultradead3 144 340 IPR014001 -
Vivi5g03320 887 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 130 381 - -
Vivi5g03320 887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 382 IPR027417 -
Vivi5g03320 887 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 541 694 IPR001650 -
Vivi5g03320 887 MobiDBLite consensus disorder prediction 1 33 - -
Vivi5g03320 887 PANTHER SNF2/RAD54 FAMILY MEMBER 18 813 - -
Vivi5g03320 887 SMART helicmild6 567 650 IPR001650 -
Vivi5g03320 887 MobiDBLite consensus disorder prediction 1 112 - -
Vivi5g03320 887 Gene3D - 394 751 IPR027417 -
Vivi5g03320 887 Pfam SNF2-related domain 164 421 IPR000330 GO:0005524|GO:0140658
Vivi5g03320 887 MobiDBLite consensus disorder prediction 67 85 - -
Vivi5g03320 887 Pfam Helicase conserved C-terminal domain 538 650 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03320 Vivi-Chr5 123987722 123992353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03320 592 693 RAD5 or RAD16-like Gene Family AT3G16600 37.255 5.04e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi5g03320 SNF2_N 4.3e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03320 K20098 - gmx:100781003 1362.44