Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03316 ATGGTTGAGGTTGAAGCTCAAAGGTTGGAGCTTTGTTTTGTTGTTAAGAGGAAGGAAGTGGGAAGAGCTGTGTTTGGATGGTTGGTGTTTCTGTTGTTTCTTAGCCCTGTGGTTGGTCTTAGACCCTTGAGGGATAAAACTGGTTCTTGGGGTGATGAGTGGATTTTTTCCGGAAAAGACGAAAGCGACATAGGTCCTTTTTCACAATGGAATATAACCGGAACTTACCGAGGGACTTGGAAGTTTTTAGATAATACAAATGGCTCTTCTAGATTTCCAGACATCAGAAAGATAAATGGAAATTCTGTAATTGAATTAGTTAGTACGCCTACAAAGATAACTGGGGTACATTATGTGCAGGGAGTGGTTATATTCCATGATGTGTTTGACAATGAATACAATGTCGGCGGTGCTCAAATCAAAATAGAAGGTGTATATATATGGCCTTTTAGACAACTACGAATGGTAGCCAACAGCGGAAAAGACGGAGGAGGGTTGAATCAAGATGGAGATTATATTTTATCCAATCCGTATCATCTGCTTGGAGTTTTCTCGTCTCAAGTATTCCAAGAATCTTCACGACATACTATGTGGAGAAGAAAGCATTCTCCATTGCATGGCATGGAGAAAAATTGTAATGTTGAAATTTCAGCTCGTGTTTCGCGCTTGTCAATGTCAAAACACGAAGGGGAGCACGATTCTTTTCAACTGGAAGGATTAATGGAAAGTCCGTCCGTGGACGATGACGGAGATTGCATCTCACCTTTACAGTTAAATGCAACATCTATTAATATTGGAGTCTACTACAATAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTCTCATTCTTGCAAGTTCTTCTTTTGATTCGGCAAATGGAGCATAGCAACACCCAATCTGGTGCTGCCAAGGTTTCAATAATAATGATCGGTCAGCAAGCTATAGTGGATGCTTATCTCTGCCTTGTACATCTGACTGCGGGAATACTAGTTGAGTCCTTGTTCAATGCTTTTGCAACTGCTGCATTCTTCAAGTTTGTAGTTTTCTCAATATTTGAGATGAGATATCTCCTTGCAATTTGGAAGGCAAGTCGGCCTTTGAGTAACGGTGAAGGTTGGGAGACAATGAGGCGCGAGCTTTCCGTTTTATACAGCCGTTTCTACGGGATCCTGTTGGGGGGAATTCTATTCATGTACGAATTCCATTATTATTTGAAACCTATTCTGCTTCTTGTATACTCCTTTTGGATACCTCAGATAATCACCAATATTGTTCGCGATTCACGCAAACCATTGCATCCTCATTATATATTAGGCATAACCGTCACTCGGCTAGCAATCCCATTATACGTTTTTGGCTGTCCTAACAACTTCTTGCGCATAGAACCAGATCACACCTGGTGTGCGTGTTTGGTTTTATTTACTGGATTTCAAGCCGCAATTCTCCTTCTTCAGCATTATCTCGGCTCCCGTTGGTTCATTCCTCATCAGATTCTACCTGAGAAATACAGCTATTACCGGAGGTCTTCTTCTCAGGATACAAATCATTCGACAGACTGTGTTATTTGCATGACAGCCATTGATCTCACGCCACGATCAAACGATTGTATGGTGACGCCTTGTGATCATTTTTTCCACACCGGCTGTTTACAAAGATGGATGGATATAAAGATGGAGTGTCCAACATGCCGGCGCCCGCTCCCGCCTGCATGA 1716 0.4178 MVEVEAQRLELCFVVKRKEVGRAVFGWLVFLLFLSPVVGLRPLRDKTGSWGDEWIFSGKDESDIGPFSQWNITGTYRGTWKFLDNTNGSSRFPDIRKINGNSVIELVSTPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIKIEGVYIWPFRQLRMVANSGKDGGGLNQDGDYILSNPYHLLGVFSSQVFQESSRHTMWRRKHSPLHGMEKNCNVEISARVSRLSMSKHEGEHDSFQLEGLMESPSVDDDGDCISPLQLNATSINIGVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSIIMIGQQAIVDAYLCLVHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWETMRRELSVLYSRFYGILLGGILFMYEFHYYLKPILLLVYSFWIPQIITNIVRDSRKPLHPHYILGITVTRLAIPLYVFGCPNNFLRIEPDHTWCACLVLFTGFQAAILLLQHYLGSRWFIPHQILPEKYSYYRRSSSQDTNHSTDCVICMTAIDLTPRSNDCMVTPCDHFFHTGCLQRWMDIKMECPTCRRPLPPA 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03316 571 SUPERFAMILY RING/U-box 520 570 - -
Vivi5g03316 571 SMART ringv_2 520 565 IPR011016 GO:0008270
Vivi5g03316 571 CDD RING-H2_TUL1-like 515 570 - -
Vivi5g03316 571 SMART ring_2 521 564 IPR001841 -
Vivi5g03316 571 ProSiteProfiles Zinc finger RING-type profile. 521 565 IPR001841 -
Vivi5g03316 571 PANTHER RING ZINC FINGER PROTEIN 166 570 - -
Vivi5g03316 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 505 571 IPR013083 -
Vivi5g03316 571 FunFam E3 ubiquitin-protein ligase, putative 506 571 - -
Vivi5g03316 571 Pfam Ring finger domain 520 565 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03316 Vivi-Chr5 123965867 123975347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03316 521 568 C3H Transcription Factor Family AT4G12190 39.583 1.25e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03316 K23788 - gmx:100802452 1022.31