Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03312 ATGGCCACTCTCTGGAACACCACCGCCTTCAGAACCGCCGTTAACGATCCCATCTTGCCCTTTCTCCGGTCAATCAAAATAGCCCTAGAAGATTCCAAATGTTCCACTCAGAATCTCTGCAAGTTACTCAAAGATTGCATTGATAAATTCAAGGACAATCACCGCTACCAAAACGATTCCAGATTTCTCAAAATCTGGTTTCTATATATGGATGCTAGTGCTGATTTTGATAGTGTTTTCAAAGGAATGCTCAACAGTAATATATGTGCCAATGATGCTTCACTTTATGTGTATTCTGCATGTTTTTTTGAAGCAAAGGGTAGATTGTGCGATGCCGAAACAATCTATAAGCTCGGGATTTCCAAAAATGCAGAGCCAATTAAGTGGTTGGAGAAGGCACATACCTTATTTCTCAGTAGAATTTCTGAAATATGTAATGCTGCTTCAAGCCAGAAGGTTGATTGTATAGAATCTACTACGTTGGAAAACATTGGTATTAATCCATGGGAAACCTCTACTATGAATGACCTTTTGAAGAAGATAAATCCTTTAATGAAGAAATTTGATGGGTACCGATCGAGCACTAAATCTTATACAGGAAAAGTGATCTTATCCACTTTGAAGAATGCATCGAGGAATAAAGTTATAGAGCTAGGTGGAATGAAGTACCACATCAAGGGCTGTGCCGGACAGGGTGGTTTTGCTCAAGTATACAAGGCAAATGTCAACAACGATTCTGATGATGTGGTGGCACTAAAGGTACAAAAGCCAGCTTTCGCTTGGGAATTTTACATGTACCGTCAGCTAGATCAGCGTATCTCTGGCAGAGAAAGGTCAAGCTATGGTTTTGCTCATAGAGTTCATCTTTTCTCTGACTATAGCATACTCGTCTGTAATTATTTAGCTCACGGGACCCTACAGGACGTGATCAACTCATATGTGGTAGTAGGAAAATCCATGGAAGAAGTATTGTGCATTTATTACACAACAGAAATGTTGCACATGATTGAAAATTTACATGATGTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATCTGCTCGTTCGCTATGCTAGTGGTAACCTCACAGAAGATGGGTTCTTAGACCGAACCGGTTCTTGGCAAGACCAGGGTCTTTGCCTTGTTGACTGGGGAAGAGGGATTGATCTTCGTCTCTTTCCAGATCACACAATATTTAAGGCAGATTGTAGAACTTCTGGTTTTCGATGCATTGAGATGCAGGAGAATAAGCCATGGAAATTTCAGGTAGATGCCTATGGCCTTTGTGGTGTTGTCCATGTGATGCTGCATAATTCCTATATGCAAATTGTTAAAAAAGAATCATCTGATGGGGGCTCTGCGTATCATCCCAGACTACCCTTTAAACGTTACTGGAACGTCGAGCTCTGGAAGAATTTCTTCTCGAAGATGCTAAATAACTACCCCTGCCATGATGATAAGAGGTTGCTACAGGAACTGAAGAAGTCCTTCGAGGACTATATGAAGTCGGATCCTCAACGTATAAGGAAACTCAAGGAGTTACTAGCGAAGCAAAGGGTTTCTCTATGTTCTGCTTAG 1581 0.4099 MATLWNTTAFRTAVNDPILPFLRSIKIALEDSKCSTQNLCKLLKDCIDKFKDNHRYQNDSRFLKIWFLYMDASADFDSVFKGMLNSNICANDASLYVYSACFFEAKGRLCDAETIYKLGISKNAEPIKWLEKAHTLFLSRISEICNAASSQKVDCIESTTLENIGINPWETSTMNDLLKKINPLMKKFDGYRSSTKSYTGKVILSTLKNASRNKVIELGGMKYHIKGCAGQGGFAQVYKANVNNDSDDVVALKVQKPAFAWEFYMYRQLDQRISGRERSSYGFAHRVHLFSDYSILVCNYLAHGTLQDVINSYVVVGKSMEEVLCIYYTTEMLHMIENLHDVGLIHGDFKPDNLLVRYASGNLTEDGFLDRTGSWQDQGLCLVDWGRGIDLRLFPDHTIFKADCRTSGFRCIEMQENKPWKFQVDAYGLCGVVHVMLHNSYMQIVKKESSDGGSAYHPRLPFKRYWNVELWKNFFSKMLNNYPCHDDKRLLQELKKSFEDYMKSDPQRIRKLKELLAKQRVSLCSA 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03312 526 SUPERFAMILY Protein kinase-like (PK-like) 222 481 IPR011009 -
Vivi5g03312 526 Gene3D - 8 158 - -
Vivi5g03312 526 ProSiteProfiles Protein kinase domain profile. 223 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g03312 526 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 155 521 IPR015661 GO:0007094
Vivi5g03312 526 SMART serkin_6 223 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g03312 526 Pfam Mad3/BUB1 homology region 1 13 120 IPR013212 -
Vivi5g03312 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 344 356 IPR008271 GO:0004672|GO:0006468
Vivi5g03312 526 ProSiteProfiles BUB1 N-terminal domain profile. 1 158 IPR013212 -
Vivi5g03312 526 SMART mad3_bub1_i 9 120 IPR013212 -
Vivi5g03312 526 Pfam Protein kinase domain 223 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g03312 526 Gene3D Transferase(Phosphotransferase) domain 1 221 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03312 Vivi-Chr5 123936354 123941463 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03312 222 442 CBL-interacting serine-threonine protein kinases AT4G24400 25.664 1.25e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK BUB Vivi5g03312 Pkinase 5.5e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03312 K02178 - gmx:100802272 815.453