Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03308 ATGGCTTCAACTTCATCAACATGTATATTATTATTCCTCTTTTTTCTACATTTCTCTTGTTTCTTCAACAACCTTAATGCAAAACACAGCATAACCAACAATCACAAGCATCTCCACAGGCACAACAATAACCACAATCCACCATCAAACATAAGGCTTCATCGCACGTTTCTTGCGCTGCAAGCATGGAAGCAAGTGATCTATTCTGACCCAAATAACATCACTTCCAATTGGGTAGGTCCTTCAGTTTGCAACTACACAGGCATCTACTGTGCTCCATCACTAGATGATCCTAAAACCAAAGTTGTCGCTGGAATCGACCTTAACCACGCAGACATAGCCGGATTCCTACCCGACGAATTAGCCTTCCTATGTGACCTTTCAATTCTCCACCTCAACAGCAACCGTTTCTGCGGCATCATTCCGAAAACCTTCGCCAACCTAACACATCTCTCCGAGCTTGACCTTAGCAACAACAGATTCGTCGGACCGTTTCCTTCTGTCGTTCTTTCCCTTCCTTCTCTTGCCTATCTAGACCTTCGTTACAACGAGTTCGAAGGGCCGTTACCTTCTCAACTTTTCGACAAACCTTTCGATGCTTTTTTTCTCAACAACAATCGCTTCACGAGTTCTATTCCAAGAAACTTAGGAAAAAGCAAAGCTTCTGTCATGGTTTTCGCGAATAACAAATTCGGAGGATGTTTACCAGAAAGCATAGTAAACTTCGCCGATACGTTAGAAGAACTTCTCTTAATCAACACAAGTATATCAGGTTGTCTTCCAATACAAGTTGGATTTCTATACAAGTTAAGAGTTTTGGATGTTAGTTTCAACAACATTGTTGGTCCTATACCTTATAGTCTTTCAGGGCTATCCCATTTGGAGCAGTTAAACATAGGACATAACATGATGAGTGGAATAGTTCCTATGGGAGTTTGTGCTTTACCAAACTTGGTGAATTTCACTTTTTCTTACAACTTTTTCTGTGAGGAAGAGGGAATTTGTAAGAATCTGACATCAAAGAAGATAGTTTATGACGATCGGCGCAATTGCTTGCCGAACAAGGCACTGCAGAGGAGTGAAAAGGAATGTAAAACTAAACTTGAACAGCCACCAGTTGATTGTTTTGAGGTTTGTTGTGATGAAAGTGGTTCTGGGCAGAATGTTAGTGTTGGTTATGTGGCTGTTCCACCTTCTGCAATTCCAGTAGCAGCAATGCCGGTTTCTCCTCCTGTTCTTGCACCAAGATACCCTTGA 1257 0.4161 MASTSSTCILLFLFFLHFSCFFNNLNAKHSITNNHKHLHRHNNNHNPPSNIRLHRTFLALQAWKQVIYSDPNNITSNWVGPSVCNYTGIYCAPSLDDPKTKVVAGIDLNHADIAGFLPDELAFLCDLSILHLNSNRFCGIIPKTFANLTHLSELDLSNNRFVGPFPSVVLSLPSLAYLDLRYNEFEGPLPSQLFDKPFDAFFLNNNRFTSSIPRNLGKSKASVMVFANNKFGGCLPESIVNFADTLEELLLINTSISGCLPIQVGFLYKLRVLDVSFNNIVGPIPYSLSGLSHLEQLNIGHNMMSGIVPMGVCALPNLVNFTFSYNFFCEEEGICKNLTSKKIVYDDRRNCLPNKALQRSEKECKTKLEQPPVDCFEVCCDESGSGQNVSVGYVAVPPSAIPVAAMPVSPPVLAPRYP 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03308 418 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 385 - -
Vivi5g03308 418 FunFam Leucine-rich repeat extensin-like protein 1 57 218 - -
Vivi5g03308 418 SUPERFAMILY L domain-like 56 343 - -
Vivi5g03308 418 Gene3D Ribonuclease Inhibitor 57 226 IPR032675 -
Vivi5g03308 418 Gene3D Ribonuclease Inhibitor 227 359 IPR032675 -
Vivi5g03308 418 Pfam Leucine rich repeat 127 184 IPR001611 GO:0005515
Vivi5g03308 418 Pfam Leucine rich repeat 269 326 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03308 Vivi-Chr5 123836890 123838419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03308 49 383 Leucine-rich Repeat extension Gene Families AT3G24480 54.030 9.48e-132 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03308 - - gmx:100802803 611.683