Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03307 ATGGTTGAGGTTGAAGCTCAAAGGTTGGAGCTTTGTTTTGTTATGAGGAAGGAAGTGGTGTTGGGATGGTTGGTGTTTCTGTTGTTTGTTAGTCCTGTGGTTGGTCTTAGACCCTTGAGGGATAAAACTGGTTCTTGGGGTGATGAGTGGATTTTTTCTGGAAAAGACGAAAGCGACATAGGTCCTTTTTCACAATGGAATATAACCGGAACTTACCGAGGGACTTGGAAGTTTTTAGATAATACAAATGGCTCTTCTAGATTTCCAGACATCAGAAAAATAAACGGAAATTCTGTAATTGAATTAGTTAGTACGCCTACAAAGATAACTGGGGTACATTATGTGCAGGGAGTGGTTATATTCCACGATGTGTTTGACAATGAATACAATGTCGGCGGTGCTCAAATCAAAATAGAAGGTGTATATATATGGCCTTTTAGACAACTTCGAATGGTGGCCAACAGCGGAAAAGACGGAGGAGGGTTGAATCAAGACGGAGATTATATTTTATCCAATCCATATCATCTGCTTGGAGTTTTCTCGTCTCAAGTATTCCAAGAATCTTCACGACATACTATGTGGAGAAGAAAGCATTCTCCATTGCATGGCATGGAGAAAAATTGTAATGTTGAAATTTCAGCACGGGTTTCGCGCTTGTCAATGTCCAAACACGAAGGGGAGCACGATTCTTTTCAGCTGGAAGGATTAATGGAAAGTCCTTCCGTGGATGATGACGGAGATTGCATCTCACCGTTACAATTAAATGCAACATCTATTAATATCGGAGTCTACTACAATAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTCTCATTCTTGCAAGTTCTTCTTTTGATTCGGCAAATGGAGCATAGCAACACCCAATCTGGTGCTGCTAAGGTTTCAATAATAATGATCGGTCAGCAAGCTATAGTGGATGCTTATCTCTGCCTTGTACATCTGACTGCGGGAATACTAGTTGAGTCCTTGTTCAATGCTTTTGCAACTGCTGCATTCTTCAAGTTTGTAGTTTTCTCAATATTTGAGATGAGATATCTCCTTGCTATTTGGAAGGCAAGTCGGCCTTTAAGTAACGGTGAAGGTTGGGAGACAATGAGGCGCGAGCTTTCCGTTTTATACAGCCGTTTCTATGGGATCCTGTTGGGGGGAATTCTATTCATGTACGAATTCCATTATTATTTGAAACCTATTCTGCTTCTTGTATACTCCTTTTGGATACCTCAGATAATCACCAACATTGTTCGCGATTCACGCAAACCATTGCATCCTCATTATATATTAGGCATAACCGTCACCCGGCTAGCAATCCCATTATACGTTTTTGGCTGTCCTAACAACTTCTTGCGCATAGAACCAGATCACACCTGGTGTGCGTGTTTGGTTTTATTTACTGGATTTCAAGCCGCAATTCTCCTTCTTCAGCATTATCTCGGCTCCCGTTGGTTCATTCCTCATCAGATTCTACCTGAGAAATACAGCTATTACCGGAGGTCTTCTCAGGATACAAATCATTCGACAGACTGTGTTATTTGCATGACAGCCATTGATCTCACACCACGATCAAACGATTGTATGGTGACGCCTTGTGATCATTTTTTCCACACCGGCTGTTTACAAAGATGGATGGATATAAAGATGGAGTGTCCAACATGTCGGCGCCCGCTCCCGCCTGCATGA 1701 0.4174 MVEVEAQRLELCFVMRKEVVLGWLVFLLFVSPVVGLRPLRDKTGSWGDEWIFSGKDESDIGPFSQWNITGTYRGTWKFLDNTNGSSRFPDIRKINGNSVIELVSTPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIKIEGVYIWPFRQLRMVANSGKDGGGLNQDGDYILSNPYHLLGVFSSQVFQESSRHTMWRRKHSPLHGMEKNCNVEISARVSRLSMSKHEGEHDSFQLEGLMESPSVDDDGDCISPLQLNATSINIGVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSIIMIGQQAIVDAYLCLVHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWETMRRELSVLYSRFYGILLGGILFMYEFHYYLKPILLLVYSFWIPQIITNIVRDSRKPLHPHYILGITVTRLAIPLYVFGCPNNFLRIEPDHTWCACLVLFTGFQAAILLLQHYLGSRWFIPHQILPEKYSYYRRSSQDTNHSTDCVICMTAIDLTPRSNDCMVTPCDHFFHTGCLQRWMDIKMECPTCRRPLPPA 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03307 566 FunFam E3 ubiquitin-protein ligase, putative 502 566 - -
Vivi5g03307 566 SMART ring_2 516 559 IPR001841 -
Vivi5g03307 566 Pfam Ring finger domain 515 560 IPR001841 -
Vivi5g03307 566 SUPERFAMILY RING/U-box 496 565 - -
Vivi5g03307 566 PANTHER RING ZINC FINGER PROTEIN 162 565 - -
Vivi5g03307 566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 566 IPR013083 -
Vivi5g03307 566 CDD RING-H2_TUL1-like 510 565 - -
Vivi5g03307 566 ProSiteProfiles Zinc finger RING-type profile. 516 560 IPR001841 -
Vivi5g03307 566 SMART ringv_2 515 560 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03307 Vivi-Chr5 123830783 123835897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03307 516 563 C3H Transcription Factor Family AT4G12190 39.583 1.33e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03307 K23788 - gmx:100802452 1021.54