Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03304 ATGTCGCTGCAAACTCTGAAGGAAACACTCAGACACTGCACAACTCAACAATCACAACCATCTTCTTCTTCTTCCTCCCAATCCAGTTCTATTCTCCGCGACTTCGATTCCCATTTCCCAATCCGTAGAAAACCCCCTAAATCCTCTCTCGCCCACCAGCTTCGCCTCCTTCAGGACCCGGACGACACACCCTTTAACCCACACGACTTCCTTTCACAACAAAATCAATCCAAACCCCAACAACAACAACAACAACAAGTTCAACCAGAAGATGATGATGATGATGATGAAGAAGAAGAAGAGCCAGAGACAAAGAGGGTGAAATTCAGTTCAGCCAAAGCGTCTCAGTTTCAATTCGATCATACTGGACCCTTTGAGCCTTTGCTCTTGTCTTCTGACGGAGAATTTCCTGTAGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAGAGAGTGGGAGTGAAGTTTCTGTATGATTTGTACAAGAAGAATCATGGAGGCATTCTTGGAGATGACATGGGTCTTGGAAAGACAATTCAAACAATAGCATTTCTTGCTGCCATATTTGGTAAAGAAGGAGAGTCTGTTCTTCGTGAGAAACAAGTGGAGAAAATAGACCCTGTATTAATAATTTGCCCATCATCCGTTATTCAAAACTGGGAGAGTGAATTTTCTAAGTGGTCCAACTTCAGTGTTTCCATTTATCACGGTGCAAACCGCGATTTGATATATGATAAATTGGAAGCAAATGGAGTGGAGGTACTTATTACCAGTTTTGACACTTATAGGATTCATGGCAACAGTTCTTTGTCAAATATCAACTGGAACATTGTGATTATTGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTGCGACGATATGGTCTTACTGGGACTGTAATGCAAAATAAGATCTTAGAATTGTTCAATCTCTTTGATTTAGTTGCACCTGGATCCCTTGGAACACGTGAACACTTCCGTGAGTTTTATGATGAACCCCTTAAGCATGGTCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTTGTGGTTCTTAATAAATATATGTTAAGAAGGACAAAGGAAGAGACCATAGGGCATCTTATGATGGGGAAGGAAGATAACGCTGTGTTTTGTGCAATGAGTGATTTGCAAAAACGTGTTTATAGGAGAATGATCCAGCTTCCTGACATTCAGTGCCTTATAAATAAAGACCTGCCTTGTAGTTGTGGTAGCCCTCTTACTCAAGTTGAGTGTTGCAAAAGGATAGTACCAGATGGAGCTATGTGGCCTTACCTTCACAAAGATAACCCCGATGGATGTGATTCATGCCCCTTTTGCCTTGTACTTCCATGCCTTGTCAAGCTACAACAGATAAGCAATCACCTCGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGACAAACAAGTTAAAGATGCAAAGTTTGCTGCTGCTGTCTATGGCCCAGACATTGACTTAGTTGGCGGGAGCACGCAGAATGAGAGTTTCATGGGTCTAAGTGATGCCGAACATTGTGGCAAAATGCGAGCACTTGAAAAACTATTGTTGTCATGGTTTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTATCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCAACTAATTTACGTCAGTCTCTGGTGGATGATTTCAACTCCAGTCCTAGCAAACAAGTGTTCCTGATATCTACTCGTGCTGGGGGGCTTGGATTGAACCTTGTCAGTGCGAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCTCAAGACAGGTCTTTTCGATATGGTCAGAGACGACATGTTGTGGTATTTCGTCTTCTCGCAGCTGGTTCACTTGAAGAACTAGTTTATTCTCGTCAGATTTACAAGCAGCAGCTCTCAAACATCGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGATTGTAAGGAATTTAAAGGAGAGCTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGATAAACTATTTACCAGCGAAATTGTTGAACTGCATGAGACGAGTAAAAAAGACGGGCTAGAAACAGAACATGAAAAAGTAAAAATGTCAGAAGAAACTGGTTTATTAGCATCAGATTCTGAAACCAGGTTATGTGCTGAATCTACAGGTGCTTCAACTAGTAAACCAGATATTGAATTTGAAGACCTCGGTATTGTTTACGCTCACCGCAACGAAGACATTGTCAACTCCCGACCAGGGCAATTATCTACCAGCGGTGCCCCTTCAAATGATAGCTTAAGCAAGTCAGACATCTCTTTAGTCCATCAAAGAAAAAAACCAGATTGTGTACCCAAAAAACAGAAAATTCCTTTGATTGATGAAAGGAAGAGAGCCGAATTTAGCCTCCTTGCAGAGTCTATGGGCATGGGAGAGCTTACATTTAGCAAATGGTTACTATCTGCAACTCCAGTAGAGAGAGAAAAAGTGCTTATAAACTACAACAAGAAAAAGAAAAAGCTTAAAGGTTGA 2667 0.4109 MSLQTLKETLRHCTTQQSQPSSSSSSQSSSILRDFDSHFPIRRKPPKSSLAHQLRLLQDPDDTPFNPHDFLSQQNQSKPQQQQQQQVQPEDDDDDDEEEEEPETKRVKFSSAKASQFQFDHTGPFEPLLLSSDGEFPVVQVPASINCRLLEHQRVGVKFLYDLYKKNHGGILGDDMGLGKTIQTIAFLAAIFGKEGESVLREKQVEKIDPVLIICPSSVIQNWESEFSKWSNFSVSIYHGANRDLIYDKLEANGVEVLITSFDTYRIHGNSSLSNINWNIVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTVMQNKILELFNLFDLVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVVVLNKYMLRRTKEETIGHLMMGKEDNAVFCAMSDLQKRVYRRMIQLPDIQCLINKDLPCSCGSPLTQVECCKRIVPDGAMWPYLHKDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQVKDAKFAAAVYGPDIDLVGGSTQNESFMGLSDAEHCGKMRALEKLLLSWFSHGDKVLLFSYSVRMLDILEKFIIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRYGQRRHVVVFRLLAAGSLEELVYSRQIYKQQLSNIAVSGKMEKRYFEGVQDCKEFKGELFGICNLFRDLSDKLFTSEIVELHETSKKDGLETEHEKVKMSEETGLLASDSETRLCAESTGASTSKPDIEFEDLGIVYAHRNEDIVNSRPGQLSTSGAPSNDSLSKSDISLVHQRKKPDCVPKKQKIPLIDERKRAEFSLLAESMGMGELTFSKWLLSATPVEREKVLINYNKKKKKLKG 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03304 888 Pfam Helicase conserved C-terminal domain 539 651 IPR001650 -
Vivi5g03304 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 383 IPR027417 -
Vivi5g03304 888 CDD SF2_C_SNF 536 662 - -
Vivi5g03304 888 Gene3D - 395 753 IPR027417 -
Vivi5g03304 888 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 333 IPR014001 -
Vivi5g03304 888 MobiDBLite consensus disorder prediction 67 87 - -
Vivi5g03304 888 MobiDBLite consensus disorder prediction 1 34 - -
Vivi5g03304 888 PANTHER SNF2/RAD54 FAMILY MEMBER 17 814 - -
Vivi5g03304 888 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 131 382 - -
Vivi5g03304 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 704 IPR027417 -
Vivi5g03304 888 SMART helicmild6 568 651 IPR001650 -
Vivi5g03304 888 SMART ultradead3 145 341 IPR014001 -
Vivi5g03304 888 MobiDBLite consensus disorder prediction 795 814 - -
Vivi5g03304 888 MobiDBLite consensus disorder prediction 1 112 - -
Vivi5g03304 888 Pfam SNF2-related domain 165 422 IPR000330 GO:0005524|GO:0140658
Vivi5g03304 888 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 542 695 IPR001650 -
Vivi5g03304 888 Gene3D - 129 382 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03304 Vivi-Chr5 123808315 123812973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03304 593 694 RAD5 or RAD16-like Gene Family AT3G16600 37.255 5.18e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi5g03304 SNF2_N 9.4e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03304 K20098 - gmx:100781003 1367.83