Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03288 ATGGATCATTTGAGAAATGATCAACCTTCTACCTGTCCAACCAAAGTTGAAAGAAGACTTGTGGAGAAAAACAGAAGAAATCAGATGAAGATTCTCTACACCAAACTCAACTCTCTTCTCCCTAACTATAGCCCTACGGAGTTGGCGTTGGCATTACCGGACCAAGTAGATGAAGCCATAAACTATATAAAGTGTTTAGAGGCAAATGTGAAGATGGCTGAGGAGAAGAAAGAGAGATTGTTAATGGAGAAGAAGAAAAGATCGCGTGAATGTTGTTTTGGTGTACCAAAATCGCCATGTTTCGAAATTCATGAATTTGGTTCTTCTCTGCAAGTCGTTCTAACGTGTGGTTTAGATAATCAGTTCATATTCTATGAAATTACTCGTGTGTTGCATGAAGAGAATGTAGATGTCAAGAGTGTCAATTCCTCGAGAATTGGAGATGATTCTTTCCTACATGTCGTGCATGCTGAGATTCCTCAGACTTGTGTTCAATTTGGAGCGACAAAAGTGAGTGAAAGATTGAGAATGTTTGTGAGTGGATCATCCAGTGATGTGGAAATACAGCCTCATGAGTTCTGGGATTTTGAAATTGGAAATGATGTATGGAGTTTCTAG 618 0.3916 MDHLRNDQPSTCPTKVERRLVEKNRRNQMKILYTKLNSLLPNYSPTELALALPDQVDEAINYIKCLEANVKMAEEKKERLLMEKKKRSRECCFGVPKSPCFEIHEFGSSLQVVLTCGLDNQFIFYEITRVLHEENVDVKSVNSSRIGDDSFLHVVHAEIPQTCVQFGATKVSERLRMFVSGSSSDVEIQPHEFWDFEIGNDVWSF 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03288 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 66 IPR011598 GO:0046983
Vivi5g03288 205 Gene3D - 9 92 IPR036638 GO:0046983
Vivi5g03288 205 Coils Coil 56 90 - -
Vivi5g03288 205 FunFam Transcription factor bHLH162 5 93 - -
Vivi5g03288 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 84 IPR036638 GO:0046983
Vivi5g03288 205 Pfam Helix-loop-helix DNA-binding domain 16 66 IPR011598 GO:0046983
Vivi5g03288 205 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 13 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03288 Vivi-Chr5 123512141 123513479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03288 16 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.341 2.09e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi5g03288 HLH 7.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03288 - - tpra:123913718 300.056