Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03283 ATGGGTTGCCTATGTTCCAAGAGTTCAGCTGTAGAAGACAGCAATGAAAGTACCTCAAAGAAATTGCAATCAAGTAGCACAAGAGCTTCAGAGTTGAATGTTTTGAGGTTGAGTTCTTCCAAGAGGGTTGAAAGTGGAGGTGATGTGAAAGCGAAATCGAATGGATCAGTGCAGTTGTATGATGATCAAAATGGGAGGAAGAAGAAAATTGAAAAGCATGAATTGACTGTTGTTGATCATCCTGGATTTGGAAGGGTTCCTAAGGCTATAGAAGCCGAACAAGTTGCGGCTGGATGGCCGGCTTGGCTTTCTTCTGTTGCTGGTGAGGCTATCAAAGGATGGATACCGCGAAGTGCAACTACTTTCGAGAGGTTACATAAAATTGGGCAAGGAACTTATAGTACGGTTTATAAGGCTCGTGACGTGACTAATCAGAAGATTGTTGCATTGAAGAGGGTGCGGTTTGATAATCTTGATCCCGAGAGTGTCAAGTTTATGGCAAGAGAGATACATATTCTACGTAGGCTCGACCATCCAAACATAATAAAATTGGAGGGTTTGATAACCTCAGAAACATCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAACATGATTTAACAGGACTTGCAGCAAATCCTACCATCAAATTCTCCGAACCACAGCTGAAATGCTACATGCATCAACTTCTTAGTGGATTGGATCATTGCCATAGTCACGGTGTCCTTCATCGTGATATAAAGGGATCAAATCTTCTCATTGACAACAATGGTGTTTTAAAGATTGCCGATTTTGGCTTGGCGAATGTTTTTGACTCCCATCACAATATTCCATTGACAAGCCGCGTGGTAACATTATGGTATAGACCGCCCGAACTCTTACTCGGAGCAAATCATTATGGGGTTGCAGTGGATTTATGGAGTACTGGTTGCATTTTGGGGGAACTATATACGGGCCGGCCCATTTTGCCAGGAAAAACCGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGCGGCTCTCCGTCTGAGGACTATTGGCTTAAGTTGCGGTTGCCACATTCAACAGTATTCAAGCCTCCACACCATTATAGGCGATGTGTTACGGATACATTTAAGGAATACTCATCAACTGCTCTTAAACTTATAGAGACCCTACTATCCGTAGATCCGTCAAATCGAGGGACAGCAGCTGCTGCTCTGAAAAGTGAGTTCTTCACATCAGAACCTTTGCCTTGTGATCCGTCAAGTTTACCAAAATATCCTCCTAGCAAAGAGATTGACGCTAAAATGCGAGATGAAGCAACCAGAAGGCAAGGACCTGTTGGAGATAAGGAACAAAAAGTTGGCTCATCGGTTAGACAAGAAAAAGCACCTAGGGCCGTTGTCTCAACAAAAGACAATGCCGACATGGGCGCATCAGTACAGCAGAAACACTATTCCTTCTCAAAGAACCGAAGCGAATTGTCCTATCCGTATAGAGAACACGTGTCTGGGAAACACTCAGAAGATGCTAGAGAAACGGAAAATAACGCATCCGGTCATTTTTATAAAAGACCTTCACATTCAGGCCCGTTGGCTCCTGGTTCAGGCTGGGTAAGGGGCGTGAAGGAAGTTGATAACGGGCCTAATGTTTCAAACAGAGTTAACCTATCAAAACTATCCGGGCTAGTAGCATCCAGGACTTTGACGTCTGAAGATCAGGAGCCAAAACCAGTTCCCTTTCCCCACAGGAAACCAATTGAAGTAAGAAAATCCCTCGAGGCGACTAGTGGGTCCGAGTCAAGAAGAAGGCGGGACAAAAAACGGATCGTTGATCACAGTCAAATTGTAAATAGAAGAGTCCCGACCGAAAAATCAACTCCGGATGGACATGGATCGAGTGGAAACAAGATATACATGTCAGGTCCTTTACTGGCTTCCTCAAACAACATGGATCAAATGCTCAAAGACCACGATCGTAAGATCCAAGAGTTTTCGAGACGAGCAAGAGGTGAGAAAGTTCGTGCACAGCGAAAGTAG 2022 0.4402 MGCLCSKSSAVEDSNESTSKKLQSSSTRASELNVLRLSSSKRVESGGDVKAKSNGSVQLYDDQNGRKKKIEKHELTVVDHPGFGRVPKAIEAEQVAAGWPAWLSSVAGEAIKGWIPRSATTFERLHKIGQGTYSTVYKARDVTNQKIVALKRVRFDNLDPESVKFMAREIHILRRLDHPNIIKLEGLITSETSRSLYLVFEYMEHDLTGLAANPTIKFSEPQLKCYMHQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLANVFDSHHNIPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRLPHSTVFKPPHHYRRCVTDTFKEYSSTALKLIETLLSVDPSNRGTAAAALKSEFFTSEPLPCDPSSLPKYPPSKEIDAKMRDEATRRQGPVGDKEQKVGSSVRQEKAPRAVVSTKDNADMGASVQQKHYSFSKNRSELSYPYREHVSGKHSEDARETENNASGHFYKRPSHSGPLAPGSGWVRGVKEVDNGPNVSNRVNLSKLSGLVASRTLTSEDQEPKPVPFPHRKPIEVRKSLEATSGSESRRRRDKKRIVDHSQIVNRRVPTEKSTPDGHGSSGNKIYMSGPLLASSNNMDQMLKDHDRKIQEFSRRARGEKVRAQRK 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03283 673 MobiDBLite consensus disorder prediction 621 646 - -
Vivi5g03283 673 MobiDBLite consensus disorder prediction 494 513 - -
Vivi5g03283 673 ProSiteProfiles Protein kinase domain profile. 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g03283 673 MobiDBLite consensus disorder prediction 1 28 - -
Vivi5g03283 673 MobiDBLite consensus disorder prediction 647 665 - -
Vivi5g03283 673 SMART serkin_6 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g03283 673 FunFam probable serine/threonine-protein kinase At1g54610 205 446 - -
Vivi5g03283 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Vivi5g03283 673 MobiDBLite consensus disorder prediction 43 65 - -
Vivi5g03283 673 SUPERFAMILY Protein kinase-like (PK-like) 117 414 IPR011009 -
Vivi5g03283 673 Gene3D Phosphorylase Kinase; domain 1 109 204 - -
Vivi5g03283 673 CDD STKc_CDK9_like 122 406 - -
Vivi5g03283 673 MobiDBLite consensus disorder prediction 434 463 - -
Vivi5g03283 673 MobiDBLite consensus disorder prediction 543 567 - -
Vivi5g03283 673 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Vivi5g03283 673 MobiDBLite consensus disorder prediction 434 453 - -
Vivi5g03283 673 MobiDBLite consensus disorder prediction 571 613 - -
Vivi5g03283 673 MobiDBLite consensus disorder prediction 8 28 - -
Vivi5g03283 673 Gene3D Transferase(Phosphotransferase) domain 1 205 444 - -
Vivi5g03283 673 Pfam Protein kinase domain 122 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g03283 673 PANTHER CELL DIVISION PROTEIN KINASE 121 412 - -
Vivi5g03283 673 MobiDBLite consensus disorder prediction 494 673 - -
Vivi5g03283 673 FunFam probable serine/threonine-protein kinase At1g54610 109 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03283 Vivi-Chr5 123390910 123394662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03283 114 449 Core Cell Cycle Gene Families AT5G10270 49.432 1.36e-112 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi5g03283 Pkinase 3.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03283 - - gmx:100807590 1066.99