Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03272 ATGAAAGAGCTTTGTAGAAATTTCCAGCGAGGCAGTTGTACTTATGGAGAAAGGTGTAGATTTCTTCATCAACAACCAAATCAACAGCAGCGTAAATCTAATGCTTTTGGAGGTCAGACTAATTCATATCAACAACCCAATAAAAACCCTTTTGGATTTGGGTCTGCTGCTGCCTCTGCCCCTAACCAACAGCAGAAGAACAATCCTTTTGGTTTTGGATCACAGAATGCCTCCCAGTCAAATGGGGCCCCCAAATCAAACCAATTCCAGCCTTTTGAAAACAAATGGAGTCGAACATCATCCAAACCCCAGAATGGCACTCAACGTCCCTCTGATAACAATTCCCAAACAGTGAATCATAAATGCACAGATCCTGAGGTTTGCAAGCGCCAGATTGCAGAAGATTTTGAGCAAGAGAATCCACTTTGGATACTTACATGCTATGGTCATTGCAAAGGTGCTCCTTGTGACATTATTGGAGATATTAGCTATGAAGAATTACGGGCATCGGCTTACGAGGATGCTAAGAATGGGATGAGTTTGCCATTAATTGTTGAAAAAGAGAGAAACATACTAAAATCAAAGTTGGTTGAGTTTGACAAACTACTTTCTGAACCCTACAAAATGCCTCTGAATTCTTCTCTTGACATTCAAAAGTACCAATCTAATGGAGGCAATGTAAATGCATTTTCACAAGCTACTCAAAATAATAGTCCTTTATCAGTCTCAAGCTTTAGCCAACTGGGTGCTTCACTGAACACTGGTTTTGAAAGGCCCTCTGCACCACTAGTGACCCCTCCAGCGCAGCCTAATTCCTTTGGAAGTGGAGGAAACCTTTTCACATCCAACACAGGAAACCTATTCGGCAGTGTAATCTCGGGTGCTCAAAACAACACAGGAAACTCTTTCACATCCAACACAGGAAACCAATTCGGCAGTGGAATCTCAGGTGCTCAAAACAACACAGGAAACGCTTTCACGTCTAACACAGGAAACATATTTGGCAGTGGAGTCTCAGGTGCTCAAAACAACAACCCCTTTTCTACTCCAGCGACAATGTTTCCAGGATCAACTTCTCAATTCCAACAACCATCTATTGCGTTCAATAACACTAGCTCCGCCACAATGCTTCAGACAGCATCATCAGATGTTCAGTTAAATACGTCCCAAGTGGAGAATGCGTCTGTAGATGACAGTATCTGGTTAAAAGAGAAATGGAATCCTGGAGAGATTCCTGAAGAAGCTCCTCCAGACAGATTCATTCGGTAG 1269 0.4247 MKELCRNFQRGSCTYGERCRFLHQQPNQQQRKSNAFGGQTNSYQQPNKNPFGFGSAAASAPNQQQKNNPFGFGSQNASQSNGAPKSNQFQPFENKWSRTSSKPQNGTQRPSDNNSQTVNHKCTDPEVCKRQIAEDFEQENPLWILTCYGHCKGAPCDIIGDISYEELRASAYEDAKNGMSLPLIVEKERNILKSKLVEFDKLLSEPYKMPLNSSLDIQKYQSNGGNVNAFSQATQNNSPLSVSSFSQLGASLNTGFERPSAPLVTPPAQPNSFGSGGNLFTSNTGNLFGSVISGAQNNTGNSFTSNTGNQFGSGISGAQNNTGNAFTSNTGNIFGSGVSGAQNNNPFSTPATMFPGSTSQFQQPSIAFNNTSSATMLQTASSDVQLNTSQVENASVDDSIWLKEKWNPGEIPEEAPPDRFIR 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03272 422 MobiDBLite consensus disorder prediction 25 120 - -
Vivi5g03272 422 SMART c3hfinal6 2 25 IPR000571 GO:0046872
Vivi5g03272 422 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 4 59 - -
Vivi5g03272 422 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Vivi5g03272 422 SUPERFAMILY CCCH zinc finger 3 27 IPR036855 GO:0046872
Vivi5g03272 422 Pfam CCCH-type zinc finger 4 23 IPR041367 -
Vivi5g03272 422 Gene3D - 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03272 Vivi-Chr5 123174092 123180968 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi5g03272 zf-CCCH_4 7.8e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03272 K14321 - gmx:100814339 465.307