Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03266 ATGATGGGTAGAGCACCATGCTGTGATGAAAGTGGTTTGAAGAAAGGACCTTGGACACCAGAAGAGGATAGAATATTGGTGGAACACATTCAGAAACATGGCCATGGAAGTTGGAGAGCTCTTCCAAAGCTAGCAAGATTGAATAGGTGTGGAAAGAGTTGTAGATTAAGGTGGACTAATTATTTAAGACCTGATATCAAAAGAGGAAAATTCACAGAAGAAGAAGAGAAAACCATCATCAATTTACATGCTGTTCTTGGTAACAAGTGGTCAGCTATAGCAGGTCATCTACCAGGGAGGACTGACAATGAAATAAAGAATTTTTGGAACACTCATTTAAAGAAAAAGCTTCTTCAAATGGGGTTAGATCCAGTGACTCATCGTCCAAGAATCGATCATCTCAATCTCATCACCAATCTTCAAAACTTTCTTGCTGCAAACGTCATCAACAATTTATCAAACACTTTCAACATTAACTCTACAAATAATGCTCTAAGGCTTCAATCAGATGCAGCCAAACTCCAACTTCTTCAAAACATGCTTCAAATTCAAGCTCTCAGTGCCAACAATACTCCTTCAAACATGGATTATTTACTCAATATCAATCCATTTGGACAATCTTCGTCTTCGTCGCAGCAAGAAAGTTTGTTGCAAAATGAACTTTTTGGATTGAATAATCAGTCCAATATTCAAGGCTTTGAAGTGCCTCAGATGCTGAATGGTGTAACTAATGGATATGATTATATGAACTATGACAGCAATAGTAGTAGTTGCTTGAAAACTGATCAAAAAGTTGATGAACTATTTGATGCTATAACAACAAATTCTTCTTCGACGGTAGCGATGAATTCGCTTCCGAATTTAGTTTCAGTTTCAACAGATTCTGGTGTGAAAGAGATGATGGAAAATAGTAAGGTTAACCAGAATGAGTGTTCTACTAATCCTTCTTCAACTTCAACTACCTTTGAAATGTTAGGAGATTTCATGTATGAAGACGTAAGCGATGCTTATTGGAAAGATCTCTTAGACCAAGAGTCTAATGAGTAA 1047 0.3687 MMGRAPCCDESGLKKGPWTPEEDRILVEHIQKHGHGSWRALPKLARLNRCGKSCRLRWTNYLRPDIKRGKFTEEEEKTIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRIDHLNLITNLQNFLAANVINNLSNTFNINSTNNALRLQSDAAKLQLLQNMLQIQALSANNTPSNMDYLLNINPFGQSSSSSQQESLLQNELFGLNNQSNIQGFEVPQMLNGVTNGYDYMNYDSNSSSCLKTDQKVDELFDAITTNSSSTVAMNSLPNLVSVSTDSGVKEMMENSKVNQNECSTNPSSTSTTFEMLGDFMYEDVSDAYWKDLLDQESNE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03266 348 Gene3D - 70 117 - -
Vivi5g03266 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vivi5g03266 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Vivi5g03266 348 FunFam MYB-related transcription factor 14 67 - -
Vivi5g03266 348 Gene3D - 12 68 - -
Vivi5g03266 348 FunFam Transcription factor MYB39 70 131 - -
Vivi5g03266 348 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Vivi5g03266 348 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vivi5g03266 348 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vivi5g03266 348 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vivi5g03266 348 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vivi5g03266 348 CDD SANT 70 113 IPR001005 -
Vivi5g03266 348 CDD SANT 17 62 IPR001005 -
Vivi5g03266 348 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 277 - -
Vivi5g03266 348 SMART sant 14 64 IPR001005 -
Vivi5g03266 348 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03266 Vivi-Chr5 123110332 123112190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03266 2 343 MYB Transcription Factor Family AT5G16770 49.008 1.70e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi5g03266 Myb_DNA-binding 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03266 K09422 - gmx:547488 426.017