Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03253 ATGGTGTTTCTTTCAATTTTTATCAGCTGTAGGCACTGTGGCATCAGTGAGAAGTGCACGCCAATGATGCGACGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTAGACTTATGTGGGCAAATAAGGGAGCTCTTAGGGACCTATCAAGAGCTGCAACCTTGCCAACACACAATTCTCCACTAAACAAGAATGAGGCTCTGAGTGAGAAAGGCTATGAACTTGTTTCCGGTGGGACTGAAAATCATCTAGTTTTGGTGAATATGAAGAAAAAGGTAACCCGATAA 291 0.4467 MVFLSIFISCRHCGISEKCTPMMRRGPEGPRTLCNACRLMWANKGALRDLSRAATLPTHNSPLNKNEALSEKGYELVSGGTENHLVLVNMKKKVTR 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03253 96 Pfam Serine hydroxymethyltransferase 66 93 IPR039429 -
Vivi5g03253 96 CDD ZnF_GATA 9 51 IPR000679 GO:0006355|GO:0043565
Vivi5g03253 96 ProSitePatterns GATA-type zinc finger domain. 10 37 IPR000679 GO:0006355|GO:0043565
Vivi5g03253 96 Gene3D - 8 54 IPR013088 GO:0006355|GO:0008270
Vivi5g03253 96 Gene3D Aspartate Aminotransferase, domain 1 64 96 IPR015422 GO:0003824
Vivi5g03253 96 Pfam GATA zinc finger 10 45 IPR000679 GO:0006355|GO:0043565
Vivi5g03253 96 PANTHER GATA TRANSCRIPTION FACTOR 28 9 67 IPR045280 GO:0006355
Vivi5g03253 96 SMART GATA_3 4 57 IPR000679 GO:0006355|GO:0043565
Vivi5g03253 96 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 8 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03253 Vivi-Chr5 122719035 122723277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03253 8 67 Tify Gene Family AT1G51600 78.333 2.41e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi5g03253 SHMT 5.1e-07 CL0061
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03253 - - vvo:131602303 201.83