Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03239 ATGACAGCTGGGAACGCGAGTTATGTGTTACCGCCATTCTTGAGCAAAACCTATGACATGGTTGATGACGCTTCAACTGACTCGATCGTTTCGTGGGGAAAAAACAATAACACTTTTGTTGTTTTGAATGCTACCGATTTCGCTAAATATATCTTGCCTAAGTATTTTAAGCATAACAACTTCTCAAGCTTTGTCAGGCAGTTGAATACATATGGTTTTAGAAAGGTTGACCCTGACCGTTGGGAATTTGCACATGAAGGATTTTTGAGGGGTCAAAAACAATTGTTGAAAACTATCAATAGGCGGAAATCTACTCAAGCAAATGGTAATAGTCAACAACCGTCTAAGGTGCAGAATGCACCTGTTGGGGCATGTGTTGAACTGGGGAAGTTTGGGATTGACGAAGAGGTTGAAAGACTGAAAAGGGATAAAAATGTTCTTATGACGGAACTTGTTAGACTAAGACAGCAACAACAAACGACTGATAACCAATTGCAAACTGTTGGGCAACGTTTGCAAGTGATGGAGCAGCGTCAGCAACAGATGATGTCGTTCCTCGCAAAGGCTATGCATAGTCCTGGCTTCATGGCTCAATTTTCACAGCAGCAGACTGAAAGTAATAGACATGTCACCGGAGGTAAAAAGAGGCGGCTCCAGAGGCAGGAAGAAGAAAACTTAGCCACCAATAATCTCCATAATCCTCTTGATGGACGTGTTGTCAAGTATCAGCGTTCAGTTAATGAGACTGCAAAAGCGTTATTTAACCAGATGTTGCAAATGAACAACTCTACAAGGACGGAGTCGTCCATTCAGAACCGTGATGCATTCCTTATTGATGATATTCCTTCAGCCATTCCGTTAGACAGCAGTAGTTCGTCCACCCAAGTTTCTGGTGTAACGCTTTCCGAGGTTCCACCTATTTCTGGGCAGTCATGTATGGCAGTGGAATCTCAATTTCCTGTAGGTTGTGTGACTAATAGCATGTCTGAGGTACAATCTTCCCCTTCTGTGTTAACTGACTGTGTCAAAGCAGCTGAATTTCCTGAATTAACAGCACATAACTTCCAAGACACTGTTTTGAATTTTGGTAAAGTTCAAGGACTGGCTACGGAAAGCAGCTTCATGAATCCTAATCAAGATATTGTGGGGTGTGTCACTGAGAATGATGAGGAGCTTGATGTGATATCAGCTGTTTTTGATGGGACACAGTCTTTGGAAACTGATGCTTTTTCTCCTAATTCGAACGAGATTTCTAAGCTTCAAGGAATCAACGACGAGTTCTGGGATCTGTTTCTTATGCCAAGCTCACTTACCGGAGACACAGATGAAGTTAAAGATAGCTCTCTAGGATATGGTTTGACCACAGCCCAGCAATTGCCATTAGATAAGGAGATTTATCAAGAAAATATGGATAAGCAACAGCATATGGACCATCTTACGCAACAGATGGAACTTCTAGCATCAGACTCGTCATTGTGTATATAA 1485 0.4195 MTAGNASYVLPPFLSKTYDMVDDASTDSIVSWGKNNNTFVVLNATDFAKYILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFAHEGFLRGQKQLLKTINRRKSTQANGNSQQPSKVQNAPVGACVELGKFGIDEEVERLKRDKNVLMTELVRLRQQQQTTDNQLQTVGQRLQVMEQRQQQMMSFLAKAMHSPGFMAQFSQQQTESNRHVTGGKKRRLQRQEEENLATNNLHNPLDGRVVKYQRSVNETAKALFNQMLQMNNSTRTESSIQNRDAFLIDDIPSAIPLDSSSSSTQVSGVTLSEVPPISGQSCMAVESQFPVGCVTNSMSEVQSSPSVLTDCVKAAEFPELTAHNFQDTVLNFGKVQGLATESSFMNPNQDIVGCVTENDEELDVISAVFDGTQSLETDAFSPNSNEISKLQGINDEFWDLFLMPSSLTGDTDEVKDSSLGYGLTTAQQLPLDKEIYQENMDKQQHMDHLTQQMELLASDSSLCI 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03239 494 SMART hsfneu3 9 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g03239 494 Coils Coil 137 157 - -
Vivi5g03239 494 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g03239 494 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g03239 494 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g03239 494 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g03239 494 Gene3D - 6 103 IPR036388 -
Vivi5g03239 494 FunFam Heat shock transcription factor 1 6 103 - -
Vivi5g03239 494 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g03239 494 SUPERFAMILY "Winged helix" DNA-binding domain 10 102 IPR036390 -
Vivi5g03239 494 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 303 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03239 Vivi-Chr5 122391406 122395043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03239 10 490 HSF AT5G16820 49.598 9.64e-139 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi5g03239 HSF_DNA-bind 5.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03239 K09419 - qsa:O6P43_001765 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03239 5 122391406 122395043 Vivi5g03239 5 122391406 122395043 ECH