Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03234 ATGCCTGCAAATTTCAACTGTCTTGTTGACATGACTTACCCTCATTGGTATTCATCAAAAACTGGTATTTACAATAGTCTTCACTCTCCTATAAACCTTCCAACTGACCCTTTTGTTGACATTGTTTCATTTATTTTTTCTCATTCTCATGATGGGGTTTTGGCCCTTATTGATTCCTCATCTGGGTCTTCTGTTTCTTATTCAAAGTTGTTACCTTTAGTTAAAACCATGGCTTCTGGTTTAAGCAAAATGGGTGTTAAACAAGGTGATGTTGTTTTGCTTTTACTTCCAAATTCAATTTACTATCCTGTTATACTATTGGCTGTTCTTTATTTAGGTGCTGTTTTTACACCATTGAATCCTCTTAGTAGTGTTTCTGAAATTCAGAAACAGGTTAATGAGTGTGGTGTGAGTTTTGCTTTTACTGTTCCTGAAAATATTAAGAAACTAGAGCTATTAGCTTTTCCGGTTATTGCTGTACCAGAAAATGACAAGGATGTGAAGAATGATTGTTTCTCTAGTTTTTTTAGTCTAATTTATGGTAACTTTGATTTGACTCAAAGGCCAATTATTAAGCAAGAAGATACTGCTGGTGTATTGTATTCTTCTGGGACCACAGGTGTGAGCAAAGGAGTTGTTTTAACTCATAGAAATCTTATTTCTATGGTTGAGCATTTTGTGAGATTTGAAGCTTCTCAATATGAATCCTCTAGTTCCAAGAATGTGTATCTAGCTGTTTTGCCAATGTTCCATATATATGGTTTATCGCTGTTTGCTGTTGGATTGTTGTCGTTGGGTTCTACAATTGTTGTAATGAGGAAATTTGATATTGATGAGGTTATTAGACTGATTGACAAATATAATGTTACACACTATCCTGTTGTTCCACCGATGTTATCGGCATTGACAATGAAGGCAAAGGGTGTTAATGGAAGTAAGTTGCAGAGTTTGAGACAGGTTTCCTGTGGTGCAGCGCCTTTGAGCACAGAAGTTAGTAGTGGTTTTGTCCGTGCTTTCCCTAACATTGATTTAATACAGGGGTATGGAATGACCGAGTCGACCGCAGTAGGAACACGTGGCTTCAATACTGAAAAATCTCACGAGTATTCTTCAATAGGGTTGTTAGCTCCAAACATGGAGGCAAAAGTTGTAGACTGGAATAATGGTGCCTTATTGCCCCCAGGCAGCAGCGGCGAGCTTTGGTTGAGAGGGCCGTCGATTATGAGAGGATACTTGAACAACAAGGAAGCTACAATGTCAACAATTGATAAAGATGGTTGGCTACGCACCGGAGATATTGTTTATTTTGATCAGGATGGATATTTACATTTGTCTGACCGCTTGAAAGACATTATCAAATACAAAGGGTTTCAGATCGCTCCTGCGGACTTAGAAACAGTGTTACTTTCGCATCCTGAAATAGTTGATGTTGCTGTTACTGCTGCCAAAGATGAAGAAGCTGGGGAGATTCCAGTAGCATTTGTGGTCAAGAAGGTCGGAAGTGTACTTTCACCGAAGCATGTTATCGATTATGTCGCCAAGCAGGTTTCTCCATACAAGAAGGTTCGGAAAGTTTTCTTCACCGACAAGATACCTAGGTCTCCGACTGGAAAGATCCTTCGAAAAGATCTCAGGCATTGGTCGACTTCTAAACTTTAA 1659 0.3888 MPANFNCLVDMTYPHWYSSKTGIYNSLHSPINLPTDPFVDIVSFIFSHSHDGVLALIDSSSGSSVSYSKLLPLVKTMASGLSKMGVKQGDVVLLLLPNSIYYPVILLAVLYLGAVFTPLNPLSSVSEIQKQVNECGVSFAFTVPENIKKLELLAFPVIAVPENDKDVKNDCFSSFFSLIYGNFDLTQRPIIKQEDTAGVLYSSGTTGVSKGVVLTHRNLISMVEHFVRFEASQYESSSSKNVYLAVLPMFHIYGLSLFAVGLLSLGSTIVVMRKFDIDEVIRLIDKYNVTHYPVVPPMLSALTMKAKGVNGSKLQSLRQVSCGAAPLSTEVSSGFVRAFPNIDLIQGYGMTESTAVGTRGFNTEKSHEYSSIGLLAPNMEAKVVDWNNGALLPPGSSGELWLRGPSIMRGYLNNKEATMSTIDKDGWLRTGDIVYFDQDGYLHLSDRLKDIIKYKGFQIAPADLETVLLSHPEIVDVAVTAAKDEEAGEIPVAFVVKKVGSVLSPKHVIDYVAKQVSPYKKVRKVFFTDKIPRSPTGKILRKDLRHWSTSKL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03234 552 Gene3D - 450 551 IPR045851 -
Vivi5g03234 552 Pfam AMP-binding enzyme 52 454 IPR000873 -
Vivi5g03234 552 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
Vivi5g03234 552 FunFam Long-chain-fatty-acid--CoA ligase FadD 26 449 - -
Vivi5g03234 552 FunFam 4-coumarate--CoA ligase 2 450 551 - -
Vivi5g03234 552 CDD 4CL 33 544 - -
Vivi5g03234 552 Pfam AMP-binding enzyme C-terminal domain 464 538 IPR025110 -
Vivi5g03234 552 Gene3D - 23 449 IPR042099 -
Vivi5g03234 552 SUPERFAMILY Acetyl-CoA synthetase-like 50 547 - -
Vivi5g03234 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 17 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03234 Vivi-Chr5 122332352 122335745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03234 14 552 Monolignol Biosynthesis Gene Families AT4G19010 60.074 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03234 K01904 - gmx:100804808 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03234 5 122332352 122335745 Vivi5g03234 5 122332352 122335745 ECH