Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03230 ATGATGGGAATTCGACCTCAGCAATCGTCTGTGGACGAAGAGGACGAGGAGCTTCTAGGTTGTGGAACTACGGTTTCCGGCCAATCAGGCTCCACTAGCAGGAGTGCCGGTTTGCCGTCTTCCGGGACTGCTGCTGGTGACAACGCGGCTCTCAAATTAAACCATCTTGATATACAGGATGATGAGGCTGGATCACAGGGAGCAGTTGCTAGCAAGAAGAAAAAGAGAGGGCAACAGAGGGCTGTTGGAGGTGATAAAAGTGGAAGAGGGCTTCGCCAATTTAGCATGAAAGTGTGTGAGAAGGTGGAAAGTAAGGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAGTTTGCTGATCCAATCAATAGTGTTTTGTCCCCTGATAAGCAACAATACGACGAGAAAAACATTCGACGAAGGGTCTATGATGCTCTGAATGTTCTAATGGCAATGGACATTATCTCTAAGGATAAAAAGGAAATACAATGGAGAGGTCTTCCTCGTACTAGTCTGAATGATATTGAAGAGCTAAAGACAGAGCGCCTTGGGCTTAGGACTAGAATTGAAAGGAAATCATCCTATCTGCAGGAGTTAGAGGAACAATTTGTAGGTCTTCAAAACCTTATTCAACGAAATGAACAGTTATATAGCTCCGGCAATCCTCCTAGCGGAGGTGTATCTTTACCCTTTATTCTAGTACAGACTCGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTTAATAGTACTCCCTTTGAGTTGCATGACGACAATTACGTGCTAAAGGCAATGGAATTCGGTGATAGACCACAGAATGATACTGTTACGCACAATGTTACAGATGCAGGTGAAGGTTCTAGCATGTCCGGCATGCAGTCACAGGTTCCTCCTTCAGTTTCAAGCGTGTCGACTAGGCCTCCCACATCACCTCCACTCCCGGGAATATTAAAGGCAAGAGTTAAGCAAGAACACTGA 1014 0.4497 MMGIRPQQSSVDEEDEELLGCGTTVSGQSGSTSRSAGLPSSGTAAGDNAALKLNHLDIQDDEAGSQGAVASKKKKRGQQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPINSVLSPDKQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSLNDIEELKTERLGLRTRIERKSSYLQELEEQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMEFGDRPQNDTVTHNVTDAGEGSSMSGMQSQVPPSVSSVSTRPPTSPPLPGILKARVKQEH 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03230 337 PIRSF Txn_factor_DP 7 337 IPR015648 GO:0005667|GO:0051726
Vivi5g03230 337 MobiDBLite consensus disorder prediction 1 49 - -
Vivi5g03230 337 Gene3D - 81 174 IPR036388 -
Vivi5g03230 337 FunFam Transcription factor-like protein DPB 81 174 - -
Vivi5g03230 337 SMART E2F_TDP_2 86 169 IPR003316 GO:0005667|GO:0006355
Vivi5g03230 337 Pfam E2F/DP family winged-helix DNA-binding domain 89 169 IPR003316 GO:0005667|GO:0006355
Vivi5g03230 337 SUPERFAMILY "Winged helix" DNA-binding domain 89 170 IPR036390 -
Vivi5g03230 337 Coils Coil 199 219 - -
Vivi5g03230 337 FunFam Transcription factor-like protein DPB 175 299 - -
Vivi5g03230 337 MobiDBLite consensus disorder prediction 63 89 - -
Vivi5g03230 337 PANTHER TRANSCRIPTION FACTOR DP 29 323 IPR015648 GO:0005667|GO:0051726
Vivi5g03230 337 MobiDBLite consensus disorder prediction 284 315 - -
Vivi5g03230 337 Pfam Transcription factor DP 177 291 IPR014889 -
Vivi5g03230 337 SUPERFAMILY E2F-DP heterodimerization region 175 290 IPR037241 -
Vivi5g03230 337 CDD DP_DD 174 277 IPR014889 -
Vivi5g03230 337 Gene3D Transcription factor DP 175 318 IPR038168 -
Vivi5g03230 337 MobiDBLite consensus disorder prediction 282 337 - -
Vivi5g03230 337 SMART DP_2 176 335 IPR014889 -
Vivi5g03230 337 MobiDBLite consensus disorder prediction 22 42 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03230 60 285 E2F-DP Transcription Factor Family AT5G02470 50.661 1.96e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vivi5g03230 DP 1.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03230 K04683 - qsu:112000390 498.434