Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03200 ATGGACGTAGACTATGAAGATATAGATTGTGAAGAATTGGTTAGTTGTAATAATGTCGGCGATGAAGAAGGAAAAGAGGACATGGATATTTACAAAAAGATTAATGACCTGACAGATGATGATATAAGAGGTTTGGAATTTGTTTCTGAGGAAAAAGCAATAGATTTCTATGAAATATATGCAAAATGTCACGGGTTTGCAATAAGAAAAGATGATGTAAAACGTGATTATGAAGGGAATATAATTGTTCGTCAATTAGTTTGTAACAGAGAGGGTAAGAGTGATAAGAAGCGGGGACGATGTAGAGATCCGAGGCCAACGATGCCAATGGAATGTCGTGCGAGGTTTCGAGTAGCTCTAAATCTTGCGACTGAAAAGTGGAGAGTTTCTGTATTTGAGCCCTCTCATAACCATGAGTTAACTCCAACACATTATGTTCATCTGATTCCTAAGTATCGTCGATTGAGTGAATCAGATAAAGCTCTTGTTGATGGTCTGCATACACAAGGTGTTAGAACATGTCATATTTTAGGTTTTATGATGGCTCAAAAAGGTGGTCATAAAGGTCTGGGATTTTGTAAAAAGGACTTATATAACTACTTAAATAATGAAGCAATGGCAAGAATAGAAGGAGGGGATGCTTTTGCTGCTTTGAGTTATTTACAGGCTAAAGCTGATAATGATCCAATGTTCTTTTCGAAGTTTACCACAACAGATGAAGGACGTTTAGAAAACTTATTTTGGTCAGATTCAGCTAGTCGGATTGACTATGAATGTTTTGGTGATGTGATTTCTTTTGACGCAACTTATAAGAAGAACAGGTATAACAAGCCTGTTGTTGTTTTTTCTGGATTCAACCATCATGGAGAAACTACAATATTTGGTTGTGCTTTGGTTTCTGATGAAAAAGCTGAGACATTCAAGTGGATTTTAAATACTTTTTTGGAAGCAATGTATCATAAACATCCTAAAGGAGTGGTTACAGATGGAGATCTTGCAATGAGAGAAGCTATCCGAGATGTATTTCCAAACTCGTTGCATCGTCTTTGTTCATGGCATTTACATAGAAATGCTGTTGAGAATGTGAAGAATCCAAAATTCTTGGAAGATTTTAAGTCATTGATTTATGCTGCTTACACTGTAGACGAGTTTGAAAATGAGTGGAAGAGGGTAGTTGATGATTATGGTTTATCAAACAACAAATGGGTTAAGAAAACATATGAGATGAAGAGAATATGGGCTAGTGCATACATGCGAGATAAATTTTTTTGTGGTATAAGAACTACATCAATCTCTGAAGCCGTCAACTCTTTTATCAAGATGTATGTTCAGAATAAAAGCAGTCTTGTTGATTTCATGCACGGTTTCGAAAGAGCTGTAAAAGAATACAGGAATAATGAGTTAATATCTAATTTTAAAACGTTCTATTATGATCCCGTGTTAACAACTAAATTGGAAGGGTTGGAGCTTGAAGCTGCAAAGATTTTTACTAGGAAAAAATTTAAGGAAGTTCAAGATGAAATAGAAGATGCGATCAAGGTAAATGTTATCGAACGGTCTGAGCTCGAAAATGTTGTGAATTTTAAGATGAATATGTTTTGCAACAAAAATTATACATATCTAGTTCATCTTGATAGGGCACAGAGTAAATTTTTATGTGATTGTAATTTGTTTGAACGGGTAGGAATTCCATGTTCTCACATCATTTGTGCCATGAGGCACGAGCACATGAACATATTTCCAAATAGTTTGATTTGTAAAAGGTGGACCAAAACAGCAAAAGATGATTACATATCGTCAATGTCTTCTGAAGAATGTGATGATGAGAAAATGGTCATGCTCCGTCGAGGGACTATGTCTTCTGCGTTCAATAGTTTGTGTGATATTTCTTGTAAACATCCGGATGATTTTAAAGAGGCTATGAAGGGGATTTATGGTTTGTGTGAGAAAATAAAGAGACGTCGTGATGAAAATGGAAATCATAAGACTAAAGGTGCTCCTCGTAAGAGCAAAGGCATTCCTCGCAAGACTAAAGGTGCTTCTCGTAAGACAAAGGGTGTCCCTCGTAATACCAGTCACACAAAGCATAAATATCAAGATATAGGTGAACATGATGCTCTACATGAAGTTGACAAAGGATCTGTTGCAATATCAAATGTAGGGGGTGAGGGTGTTGATAAGAATTCTGGTAGTCAGCAGAAGAAAAAGGATGTTGATGTTGCTTGTTCAATGAAAGAATTTATCAATAAAAGAACATCAAAACATATTGAAAATGAAGACATTGGCCGATCAAACGAGAACATGTCAAACATACCTACAACTTTGGAAAATAATGTTCACGGGTGCGGTCTTATATATGGTATACCCTCTGTTAAAATAGAAGGTCAAAATGTAACACGGAACCATAGTTTAGGATATGCTCCTAATTATACTCTTGGTTCTAACGGTATTCCAGTTCAAAGTATTCCAGTACCTACTCAATTTCCACCAACAGTTAACTTCTCATCATCACACTTGAATGCTCTTATGTATCCTAGACCACACATTTTTCCTCATAATACATCGTTTTTAGGTGTGCTGGAACAGGTTGAGAGTTCGGCAAAAATGGCTTGCAAGAAAAATGATCCATATAAATGA 2637 0.3599 MDVDYEDIDCEELVSCNNVGDEEGKEDMDIYKKINDLTDDDIRGLEFVSEEKAIDFYEIYAKCHGFAIRKDDVKRDYEGNIIVRQLVCNREGKSDKKRGRCRDPRPTMPMECRARFRVALNLATEKWRVSVFEPSHNHELTPTHYVHLIPKYRRLSESDKALVDGLHTQGVRTCHILGFMMAQKGGHKGLGFCKKDLYNYLNNEAMARIEGGDAFAALSYLQAKADNDPMFFSKFTTTDEGRLENLFWSDSASRIDYECFGDVISFDATYKKNRYNKPVVVFSGFNHHGETTIFGCALVSDEKAETFKWILNTFLEAMYHKHPKGVVTDGDLAMREAIRDVFPNSLHRLCSWHLHRNAVENVKNPKFLEDFKSLIYAAYTVDEFENEWKRVVDDYGLSNNKWVKKTYEMKRIWASAYMRDKFFCGIRTTSISEAVNSFIKMYVQNKSSLVDFMHGFERAVKEYRNNELISNFKTFYYDPVLTTKLEGLELEAAKIFTRKKFKEVQDEIEDAIKVNVIERSELENVVNFKMNMFCNKNYTYLVHLDRAQSKFLCDCNLFERVGIPCSHIICAMRHEHMNIFPNSLICKRWTKTAKDDYISSMSSEECDDEKMVMLRRGTMSSAFNSLCDISCKHPDDFKEAMKGIYGLCEKIKRRRDENGNHKTKGAPRKSKGIPRKTKGASRKTKGVPRNTSHTKHKYQDIGEHDALHEVDKGSVAISNVGGEGVDKNSGSQQKKKDVDVACSMKEFINKRTSKHIENEDIGRSNENMSNIPTTLENNVHGCGLIYGIPSVKIEGQNVTRNHSLGYAPNYTLGSNGIPVQSIPVPTQFPPTVNFSSSHLNALMYPRPHIFPHNTSFLGVLEQVESSAKMACKKNDPYK 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03200 878 MobiDBLite consensus disorder prediction 655 705 - -
Vivi5g03200 878 Pfam FAR1 DNA-binding domain 55 141 IPR004330 -
Vivi5g03200 878 PANTHER OS01G0519700 PROTEIN 42 609 - -
Vivi5g03200 878 ProSiteProfiles Zinc finger SWIM-type profile. 538 576 IPR007527 GO:0008270
Vivi5g03200 878 MobiDBLite consensus disorder prediction 665 692 - -
Vivi5g03200 878 MobiDBLite consensus disorder prediction 718 737 - -
Vivi5g03200 878 Pfam MULE transposase domain 263 357 IPR018289 -
Vivi5g03200 878 SMART 26again6 551 578 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03200 Vivi-Chr5 121879539 121883973 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi5g03200 MULE 3.8e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03200 - - vvo:131629359 1019.22