Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03152 ATGGAATTCGTTGGGAAAACCGTTCAGAAAGAGGGGGAAGGGGTTGGGATTGTGTCAGGAACTGTGAAATCCTTCGACGATTCGTCGGGTTTACTGAAGATCCTTTTCGAAGACGGTCATTGTGAGGAGATGGAAGTTTCCGAAGTTGCTCCGCTCTTGGAAATTCAAACGGAGCTTCCTAAGGTCAAGGCGAAGGTCGGTCGGAAACCTAAAAAGCGACGGATGCTTGAGCGGAGTGGCGGAGCGACTTCGTCTTCAGGTAATGTTACTGATACTTTGGTGGCGGGTAGTGAATTTAGCGGGGTTTTGAATGGGAATGGTTTTAGTGGCGGGAATGAAGGGAATCTTAGGGGTAGTGTGAATGGAACTAGTGGGAGTGTGGAAAAACTAGGAAATGGAAATGGATTTGGTTCTGATGAGATTTTGAATTTGAATGAGGCTATTTCCGATGATAATAATAATAATAATAATAATAATAATAATAATAATAATAATACTAATGGAGTTTTTGTTAAAGATGATATTGATTTGAATTCTGAGCTTAATTTGAATGATGATATCGATTTGAATGATGTGTCTGAATCGCCTTTTAATAACGGTGATTTGAATAGAAAAGATTGTATTGATTTGAATTTGGATGTGAATGTGAATGTGAATGATGAGGAGGGTGTGAATTTGGGAGAGGAAGCTTTGCCGCGGGAATGTAATTTTGATTTGAATGTGGGTGTGTGTGAAGAAGTTAAGGAGGCTCAGGGTTGTGCTGATGGAAATGGGTATTCTGAGGTAGATTGTGAGATGGGACAGCTGCGGGAGGAAGAGTCGGTTGTTAAGCATAGGTCTATGGAAGTTGATGGGGTTTGTGATAACTTGAATTGTGCCTCTGATGCTGTCAAATTGGAGGAAAAGGAAGGCGGTGGTTCTGTTTCCCTCGAAGCTGGTGTTGTCGCAGCTAATGAATACCAATCTGATCTTGGAACTCCATGCAAACAAGGAAGTAGTCCGAGGAAGAGAAGGAAAGTGTCAGATATTGTAAAAGCCACCCCGGACACGGCTTTGAGGAGGAGTTCTCGCCGGACATCAGCTAGAAAACTAGCTTCAGCTGCAGTATCAGAGCAGGTCACTGACGATCCTCTGTCGTCCTTGGAAACCAGTGTAGCAGCAGAAGAAAAACCTACAATCACTGAAAATGAGAAATATGAACAGTGCAATGTTCCTATTCCGAAGCTGCAATTACCCCCTTCTTCCAAAAATTTGAATTTAGACGGCATTCCTGTTCTTGAATTTTTTTCTGTTTATGCTTGTTTAAGATCATTCAGTACCTTGTTGTTTTTGAGTCCATTTGAGTTGGACGATCTTGTAGCGGCACTTAAGTCTGAAATCCCTAGTGTCTTATTCGATAGCATTCATGTTTGTATTTTGCAAACTCTGAGAAAGCATTTGGAATTCCTTTCCACTGAGGGTTGCCAATCTGCGTCAATATGCCTGAGGAATCTTAACTGGGATTTCTTGGACCTTGTCACATGGCCCATGTTCTTGGCCGAGTACCTTCTGATTCACAGTTCACGATATAAAACTAGTTTTGATGCTAACCTCTCAATATTGGTAACTGACTACTACAAACAGCCTGTCATTTTGAAGCTTGAGATTCTGCAGTACCTGTGTGATGATATGATTGAAGCAGACACCATAAGGTCAGAGCTTAACAGAAGGTCTTTGGTAACAGAGACTGGTATGGGTTCTGATCAGAATATTTATTTTGACACTAGCAAGAAAAAGAAAGCTGTAATGGATGTTTCTGGAAGCTCTTCCTTGACTGAGGAGATTGTGGATGACACAACTGACTTGAACAGTGATGAATGTTGCCTTTGCAAGATGGATGGAAATTTAATATGTTGTGATGGTTGCCCTGCTGCATACCACTCAAGGTGTGTCGGGATTGCAAGTAACAATCTGCCAGAAGGTGACTGGTATTGCCCTGAGTGTGCTATTGGCAAACACCAGGCATCGATGAAATCACAAAGGTCACTCCGAGGAGCAGACTTGTTGGGGATGGATCCTCACGGCTGTCTTTATTTTGATAGTTGTGGTTACCTGTTAGTTTCAAAGTCATCAGATGCGGGGTCCTTGTTCAATTACTACCATGTAAATGATATACCTGTTGTGATCGAAGTTCTAAAATCCATGGATACTTTATATGGAGACTTATTAATGGCTATCTACAAGAGTTGGGATATTCCGGCTGACTTAAATGCAGGGGCTAGTAATTTGGCCGTCTTTAATCGAAGTTCATTCAAGAACATGCAAATGACGGCTAAATATTATTCTATGTCCACATCTTTAGCACCTTTTACTTCTTCAGTAACATTTATGGACAAGAATCTAGTTGATGATCAGAAAATGTTGGAGAAAAATTCGACTATTGACTGTTGTACTCGTGATGGCCAAGAGTTTCCAAAAGCTGGGAACAAATTAGACTCAACGATAGAAAGTCCTTGTATTGCCTCAGAAGGATCAGCTGATACCGCACAGATGAGATCAGGCATTGAGAGTATTCAGATGCACAGGCTATACGATTCCAATAGATCAGATGAATCCTTAAATCAATCAAAAATACCAGAAAAAGACTTTCCCGTTGGCGACTGTTCTTTGGCATCTTCCACACTAGATGGGGAACATAATATTGAGTTAAGATCCATAGGTGTTAGCAGTACCCCCTATATGGGCAATAAGGATACATCACAAGCTCCTTATGGGACTGACTACATAAACTATTACAGCTTTGCAAGGATGGCCTCATCAATTGCCCCGGAGTTGATGTGTAAGATATCTGAAAAGATCAATAAAAATATTATAGTGACTGAAGAAGAAATAATTTCAGACCAAGCAAAGACCATCATTAAGAAGTCCACCAATTTTTGTTGGCCAAGTATTCAAAACCTGAATGCAGCTGCCCACAAGGAAAAATGCGGATGGTGCTTTTCTTGCAAGGTTGCAAATGATGACAGAGATTGCATATACCTTTCTGTGGTGAAACCACTTTATGAAGTGTCTAAAAGTTCTTCAGCTGGGCCTCAACCCAAGATCCAGAATGGACATCTTAGAGAGATAATATGTCAAATTTTCTCTCTCGAGGCTCGATTGCGGGGTCTTTTATTGGGTCCATGGTTGAATCTGCATCAAACTAATTTTTGGCATGAGGATCTTTTGAAGACATCTGATCTTCTTTCTGTGAAACGATTATTGCTTCTTTTGGAATCCAATTTGAGACATCAAGCACTTTCAGTCGAGTGGTTAAAGCATGTGGATTCTGTGGTTACTATGGGATCAGCTACTCATATTGTGGTGGGTTCATCACGCACATCCTCAAAGCATGGTATTGGAAAGAAAAGAGGCAGACATTCAGATATTGAATCCAGTTCATCTTCAAAGACTACCGGTGGTTTGGGAATGTATTGGTGGAGAGGTGGTAGGCTTTCTCGAAAGTTGTTTAATTGCAAGGCCCTGCCTCGCTCCGTTGTTACCAAGGCTGCTAGACAAGCTGGGTTTACAAAGATACCAGGTATTTTTTATCCTGAAAATTCAGACTTTGTAAAGAGAAGCAGATGTTTTGCCTGGCGAGCTGCTGTTGAGATGTCAACAAGCGTTGATCAGCTGGCTTTACAGGTTAGAGAACTCTACTCAAACATAAGGTGGCATGATATTGAGAATAACCATCCTCTACATGTACTGGACAAGGAATCTAGAAAATCATCCAAGCTATTCAAAAAAGCAATTGTACGTAGGAAGTTGCCAGATGGACAATCTGTGAAATATCTTCTAGATTTTGGGAAGAGGAGGGTTATTCCGGATATTATTACTAAGCACGGTTCTTTATTGATGGAGGAACCCGAAAGTGAGAGGAAAAAGTATTGGCTGAACGAGTCTTATGTTCCTTTACGTCTTGTAAAGAATTTTGAGGAAAGAAGAATCGTCCGCAAGTCCAATAATAAGAAACATGGAAAAATTCTTGGGATTGATAGAGTAAAGAGGGCTTCTCAACAAAGGGGGTTTTCATATTTGTTTTCTAGAATGGAAAGATCTGTTTGTCATCAGTGTGAGCATTGCAAAAAAGATGTTCCGGTCAGGGAAGCTGTGAGTTGCCTTCATTGCAAAGGATATTTTCACAAGAGGCATGTCAGGAAATCTGGCAGCACAACCGCTACTGAATGCACATATTCTTGTCATAAATGCCAGGATGGGTTGCAAGTAAAGGCTAATACTAATGGTAGGAAAGTTGGCACAAAACTGCAGAAGATTCAAGCACAGAATTGTAAAAGTGATCCATTGGTCTGTAAATCAGCGAACGTTAAAGGCAAAAAGAAGGCATCAAGTAAGGTGCGGCAGGTGTTATCTCAAAACAATAAGAAAATCCAATCAGTTGTACCTCTTCGTCGTTCTACTAGAAAAGTCAAATCCATGTATTCACGCAATCAAATGATTGGAGGATATAAAAAAGGAATGCAGAGTAAAAAGAATGTAGGGCATAAAAAAGGAAAGAACAGTAAATCCAAGAAGGTAACCTCACAAAAGTCCAAGAAAACTACTGGTCAACGCAAGACGTGGGAAGTAACTATTGCACGTGAGAAGAGATCAAAACATTTTAGCAGTTACTGGCTTAACGGTCTTTGGTTTTCTAGAAAGCCAAATGATGAACGAGTAATGCTTTTTGAAGCGAAAAAGCATACTATCTCCGCTGTTATTTCTGGTTCATTTGATTATCCTAAATGCCGCCTTTGTTGTGGAGATGAATCTACTTCAAATTATATTGCTTGTGAAAAATGTGGAGATTGGTTTCATGGGGATGCTTTTGGTCTCACCGAAGAGAATGCTAGTCAACTTATTGGGTTTAAGTGCCATGTTTGTCGTGGAAGGGATGCTCCAATCTGTCCCCATGTGAAAATTAATGCATTGTCTCACACTGAACCCAATGCCGCAATTGAGCGTGCAGAGGAATAA 4995 0.4068 MEFVGKTVQKEGEGVGIVSGTVKSFDDSSGLLKILFEDGHCEEMEVSEVAPLLEIQTELPKVKAKVGRKPKKRRMLERSGGATSSSGNVTDTLVAGSEFSGVLNGNGFSGGNEGNLRGSVNGTSGSVEKLGNGNGFGSDEILNLNEAISDDNNNNNNNNNNNNNNTNGVFVKDDIDLNSELNLNDDIDLNDVSESPFNNGDLNRKDCIDLNLDVNVNVNDEEGVNLGEEALPRECNFDLNVGVCEEVKEAQGCADGNGYSEVDCEMGQLREEESVVKHRSMEVDGVCDNLNCASDAVKLEEKEGGGSVSLEAGVVAANEYQSDLGTPCKQGSSPRKRRKVSDIVKATPDTALRRSSRRTSARKLASAAVSEQVTDDPLSSLETSVAAEEKPTITENEKYEQCNVPIPKLQLPPSSKNLNLDGIPVLEFFSVYACLRSFSTLLFLSPFELDDLVAALKSEIPSVLFDSIHVCILQTLRKHLEFLSTEGCQSASICLRNLNWDFLDLVTWPMFLAEYLLIHSSRYKTSFDANLSILVTDYYKQPVILKLEILQYLCDDMIEADTIRSELNRRSLVTETGMGSDQNIYFDTSKKKKAVMDVSGSSSLTEEIVDDTTDLNSDECCLCKMDGNLICCDGCPAAYHSRCVGIASNNLPEGDWYCPECAIGKHQASMKSQRSLRGADLLGMDPHGCLYFDSCGYLLVSKSSDAGSLFNYYHVNDIPVVIEVLKSMDTLYGDLLMAIYKSWDIPADLNAGASNLAVFNRSSFKNMQMTAKYYSMSTSLAPFTSSVTFMDKNLVDDQKMLEKNSTIDCCTRDGQEFPKAGNKLDSTIESPCIASEGSADTAQMRSGIESIQMHRLYDSNRSDESLNQSKIPEKDFPVGDCSLASSTLDGEHNIELRSIGVSSTPYMGNKDTSQAPYGTDYINYYSFARMASSIAPELMCKISEKINKNIIVTEEEIISDQAKTIIKKSTNFCWPSIQNLNAAAHKEKCGWCFSCKVANDDRDCIYLSVVKPLYEVSKSSSAGPQPKIQNGHLREIICQIFSLEARLRGLLLGPWLNLHQTNFWHEDLLKTSDLLSVKRLLLLLESNLRHQALSVEWLKHVDSVVTMGSATHIVVGSSRTSSKHGIGKKRGRHSDIESSSSSKTTGGLGMYWWRGGRLSRKLFNCKALPRSVVTKAARQAGFTKIPGIFYPENSDFVKRSRCFAWRAAVEMSTSVDQLALQVRELYSNIRWHDIENNHPLHVLDKESRKSSKLFKKAIVRRKLPDGQSVKYLLDFGKRRVIPDIITKHGSLLMEEPESERKKYWLNESYVPLRLVKNFEERRIVRKSNNKKHGKILGIDRVKRASQQRGFSYLFSRMERSVCHQCEHCKKDVPVREAVSCLHCKGYFHKRHVRKSGSTTATECTYSCHKCQDGLQVKANTNGRKVGTKLQKIQAQNCKSDPLVCKSANVKGKKKASSKVRQVLSQNNKKIQSVVPLRRSTRKVKSMYSRNQMIGGYKKGMQSKKNVGHKKGKNSKSKKVTSQKSKKTTGQRKTWEVTIAREKRSKHFSSYWLNGLWFSRKPNDERVMLFEAKKHTISAVISGSFDYPKCRLCCGDESTSNYIACEKCGDWFHGDAFGLTEENASQLIGFKCHVCRGRDAPICPHVKINALSHTEPNAAIERAEE 1664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03152 1664 CDD PHD2_CHD_II 620 661 - -
Vivi5g03152 1664 SUPERFAMILY FYVE/PHD zinc finger 598 663 IPR011011 -
Vivi5g03152 1664 PANTHER PHD FINGER FAMILY PROTEIN 2 1640 - -
Vivi5g03152 1664 MobiDBLite consensus disorder prediction 1496 1533 - -
Vivi5g03152 1664 ProSiteProfiles Zinc finger PHD-type profile. 617 664 IPR019787 -
Vivi5g03152 1664 Pfam DDT domain 426 478 IPR018501 -
Vivi5g03152 1664 ProSiteProfiles DDT domain profile. 422 482 IPR018501 -
Vivi5g03152 1664 MobiDBLite consensus disorder prediction 64 89 - -
Vivi5g03152 1664 ProSitePatterns Zinc finger PHD-type signature. 620 661 IPR019786 -
Vivi5g03152 1664 MobiDBLite consensus disorder prediction 1502 1525 - -
Vivi5g03152 1664 MobiDBLite consensus disorder prediction 1119 1144 - -
Vivi5g03152 1664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 679 IPR013083 -
Vivi5g03152 1664 SMART testlast3 422 482 IPR018501 -
Vivi5g03152 1664 MobiDBLite consensus disorder prediction 147 166 - -
Vivi5g03152 1664 SUPERFAMILY FYVE/PHD zinc finger 1585 1637 IPR011011 -
Vivi5g03152 1664 SMART PHD_3 1364 1411 IPR001965 -
Vivi5g03152 1664 SMART PHD_3 619 662 IPR001965 -
Vivi5g03152 1664 SMART PHD_3 1588 1635 IPR001965 -
Vivi5g03152 1664 Pfam PHD-finger 620 662 IPR019787 -
Vivi5g03152 1664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1583 1641 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03152 Vivi-Chr5 120900706 120911262 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03152 1 1658 PHD Transcription Factor Family AT5G12400 40.673 0.0 1099
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vivi5g03152 DDT 5.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03152 - - mtr:11438137 2227.21