Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03146 ATGTCACATTCATCTAGCTTAGGGTCTACACACCCTTGGATTAAGGAACTGAAATCTGAAGAAAGGGGTTTGTATTTGATTCATTTGTTGCTCACTTGTGCTAATCATGTAGCTTCTTGCAATCTTGAGAATGCTAATGCTTCACTTGAGCAAATTTCGATGCTTGCTTCTCCCGACGGCGACACTATGCAGAGGATCGCAGCGTATTTTACCGAAGCGCTCGCTGACCGGATACTGAAAACATGGTCTGGTCTTCATAAAGCGCTAAACTCTACTAGAATGGTTATGGTTTCGGAAGAGATTCTTGTGCAGAAGCTCTTTTTCGAGCTTTTCCCTTTCTTGAAGGTAGCGTTTATTCTTACGAATCAGGCTATCGTTGAGGCGATGGAAGGGGAGAAAATGATTCATATAATTGATCTCAATGCAGCCGAGCCTGCTCAGTGGATTGCGCTTCTTCAAGTTTTGAGTTCGCGTCCTGAAGGTCCTCCGCATTTGAGAATCACCGGGGTTAATCCGAAAAAAGAGGTTTTGGATCAGATAGCTCATAGACTGATAGAAGAAGCTGAAAAATTGGATATACCATTCCAATTCAATCCTGTTGTTAGCAAATTAGAAAACCTCGATTTAGATAAACTTCGTGTAAAAACCGGGGAGGCATTAGCGATTAGTTCGATTCTCCAATTACATACCTTGTTAGCCTCAAACGATGAAACCATGAAGAGAAAATCTCCTCTTTTGTTGAAATCTCCAAATGGAATTCACTTGCAAAGATTCCAGCCGATGAACCAAACCACCTTAGGCGATTTGCTTGCGAAAGATATGGTTAACGGATACACCAAAAGTCCTAACTCAACCTCGTCATCATCACCAGCTTCTTCGAACACTTCAAATCCAATGAGTATGGAGAATTTTCTCAATGCATTGTGGAGTTTATCACCGAAAGTAATGGTGGTAACAGAACAAGACTCTAATCATAACGGCGCAACACTTATGGAGAGGCTACTAGAAGCTCTATATTCTTACGCAGCGTTGTTCGATTGTTTGGAATCAACAGTGTCACGAAACTCATTGGAAAGAAAAAGAGTAGAGAAAATGCTTTTTGGGGAAGAAATCAAAAACATTATTGCATGTGAAGGGTTAGAAAGAAAGGAAAGGCACGAAAAGCTTGATAAGTGGTTCATGAGATTTGATTTAGCTGGTTTTGGCAATGTGCCTTTGAGTTATTTCGGTAGGTTACAAGCAAGGAGATTCTTGCAGAGTAACGGTTGCGAAGGGTATAGAATGAGGGAGGAAAATGGTTGTGTGGCAGTATGTTGGCAAGATAGGTCCTTGTTTTCGATATCGGCTTGGAGAACAAGGAAGTAA 1365 0.4125 MSHSSSLGSTHPWIKELKSEERGLYLIHLLLTCANHVASCNLENANASLEQISMLASPDGDTMQRIAAYFTEALADRILKTWSGLHKALNSTRMVMVSEEILVQKLFFELFPFLKVAFILTNQAIVEAMEGEKMIHIIDLNAAEPAQWIALLQVLSSRPEGPPHLRITGVNPKKEVLDQIAHRLIEEAEKLDIPFQFNPVVSKLENLDLDKLRVKTGEALAISSILQLHTLLASNDETMKRKSPLLLKSPNGIHLQRFQPMNQTTLGDLLAKDMVNGYTKSPNSTSSSSPASSNTSNPMSMENFLNALWSLSPKVMVVTEQDSNHNGATLMERLLEALYSYAALFDCLESTVSRNSLERKRVEKMLFGEEIKNIIACEGLERKERHEKLDKWFMRFDLAGFGNVPLSYFGRLQARRFLQSNGCEGYRMREENGCVAVCWQDRSLFSISAWRTRK 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03146 454 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 22 446 IPR005202 -
Vivi5g03146 454 ProSiteProfiles GRAS family profile. 17 451 IPR005202 -
Vivi5g03146 454 MobiDBLite consensus disorder prediction 277 297 - -
Vivi5g03146 454 Pfam GRAS domain family 26 451 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03146 Vivi-Chr5 120827516 120829719 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03146 7 454 GRAS Transcription Factor Family AT1G50420 66.887 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi5g03146 GRAS 1.8e-137 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03146 - - gmx:100814131 736.102