Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03136 ATGCTTCAAAGCTTGGTCCCTCGACCCCCTCTCTCTTCTAAACCTAATATGAACACAAAACGCCCTCAACGCGAACACGACGACGCCGATTCCAACCTTCCAGAACCATCTTTCAAACGACCTAACTACTCCGGCGAGAAAACAGTGGCGGAAGGTGAAACACACGACGACGACCAAGCGTTTGAGCCTCAGAATGAAGGCGAATCCATTGGTTTGAAACTCCTAGGGCTTTTACTTCAATGCGCTGAGTGTGTTGCCATGGATAACCTCGACTTTGCTAATGATCTCTTACCGGAGATAACCGAGCTCTCCTCACCGTTCGGGTCTTCACCGGAGAGAGTTGGCGCGTACTTCGCACAGGCTCTACAAGCGCGGGTTGTGAGCTCTTGCCTCGGTAGTTACTCGCCGTTAACGGCTAAATCGGTAACCCTAACTCAGTCGCAGCGAATCTTCAACGCGTTTCAATCCTACAACTCGGTTTCACCGTTGGTGAAATTCTCGCACTTCACTGCTAATCAAGCTATCTTCCAAGCTGTAGACGGTGAGGATCGTGTCCATATCATTGATCTCGATATCATGCAAGGACTTCAATGGCCAGGATTGTTTCACATCCTCGCTTCACGATCCAGGAAGATTCGTTCAGTGAGAATCACCGGCTTCGGATCTTCATCGGAGCTTTTGGAATCAACGGGAAGAAGACTCGCCGATTTCGCGAGTTCGCTCGGGCTTCCGTTTGAGTTTCATCCGGTGGAAGGAAAAATCGGAAGCGTAACGGAACCGAGTCAACTCGGTGTAAGACCAAACGAAGCCATCGTGGTTCACTGGATGCACCATTGTTTGTACGATATAACCGGAAGCGATTTAGGAACGTTGAGATTGCTGACTCAGCTAAGGCCAAAGCTAATCACCACCGTTGAACAGGATCTCAGCCACGCTGGTAGCTTTCTCGCGAGGTTTGTGGAGGCTCTGCATTATTACAGCGCGTTGTTCGACGCGCTGGGGGATGGTTTGGATGCGGACAGTGTGGAGAGGCATATGGTGGAGCAGCAGCTGTTGGGGTGTGAGATAAGGAACATTATCGCCGTGGGTGGGCCAAAGAGGACTGGCGAGGTGAAAGTTGAGAGATGGGGAGATGAATTGAAACGGGCCGGGTTTCAACCCGTTTCGCTTCGGGGCAACCCGGCTGCACAAGCGAGTTTGTTGTTGGGGATGTTTCCTTGGAGAGGGTATACACTTGTGGAGGAGAATGGTTCTTTGAAGCTTGGTTGGAAAGATCTTTCTCTTTTGATTGCGTCTGCTTGGCAACCGTCTGATTTGATTACTTACGCTTGA 1332 0.5053 MLQSLVPRPPLSSKPNMNTKRPQREHDDADSNLPEPSFKRPNYSGEKTVAEGETHDDDQAFEPQNEGESIGLKLLGLLLQCAECVAMDNLDFANDLLPEITELSSPFGSSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQAVDGEDRVHIIDLDIMQGLQWPGLFHILASRSRKIRSVRITGFGSSSELLESTGRRLADFASSLGLPFEFHPVEGKIGSVTEPSQLGVRPNEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLDADSVERHMVEQQLLGCEIRNIIAVGGPKRTGEVKVERWGDELKRAGFQPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQPSDLITYA 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03136 443 MobiDBLite consensus disorder prediction 1 18 - -
Vivi5g03136 443 ProSiteProfiles GRAS family profile. 65 435 IPR005202 -
Vivi5g03136 443 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 59 430 IPR005202 -
Vivi5g03136 443 MobiDBLite consensus disorder prediction 1 64 - -
Vivi5g03136 443 MobiDBLite consensus disorder prediction 19 34 - -
Vivi5g03136 443 Pfam GRAS domain family 76 435 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03136 Vivi-Chr5 120607572 120612047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03136 17 438 GRAS Transcription Factor Family AT5G41920 65.105 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi5g03136 GRAS 2.4e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03136 - - gmx:100816249 739.569