Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03134 ATGGAAGACATCAACATGAGTACTGAAGAAATAACACTTCCTGGATTCAGATTTCACCCTACGGAAGAAGAACTCCTTGATTTCTATCTTAAAAATATGGTTATTGGCAAGAAACTTCGTTACGATGTCATCGGTTTTCTCAACATCTATCACCATGATCCTTGTGACTTGCCAGGTTTGTCTAAGGTTGGTGAAAGAGAATGGTATTTCTTTGTGCCAAGGGACAAAAAACATGGTAGTGGAGGAAGGCCTAACCGCACAACTGAAAAAGGGTTCTGGAAAGCAACCGGTTCGGACCGAAAAATCGTGACGTTGTCCGATCCGAAGCGGATCATCGGGTTGAGGAAGACGTTGGTTTTCTATGAGGGAAGAGCTCCACGAGGAAGCAAGACCGATTGGGTCATGAATGAGTATCGTTTACCTGACAATAGCCCCTTGCCTAAGGACATAGTGTTGTGCAAGATATATAGAAAGGCAACTTCGTTGAAAGTGCTTGAACAAAGAGCAGCAGAAGAAGAAGAGATGAAACAAATGGTGGTTGGTTCTCCTACATCCCCACCTTCCTCTACGGACACAATCTCCTTTAACTACACACAACAAGACCAACACGTGCCGATACCGTTATTGTTCCAACAAGTTATTCCTAAGAAAGAATCTCAACACGAAATTGAACCAAAAACAAAAACAGAAACTCATAACATGGTTTCTGAGGCCATTATGACAGAGAAACCATGTTATGAAAAAACGATCACTCAGATGAAAGATAATAATAACAAAAAGGCTTGTGGAACATCCTTGCAATTGCCATTAGGGAAGGACAATGTTCCTGAGTTACAGTTACCTATGGTAACGGATTGGACTCAAGATACCTTTTGGACTCAGCTTAACAGTCCTTGGCTACAAAACTGGACTGCTTACTCCAACATCCTCAATTTCTAG 939 0.4175 MEDINMSTEEITLPGFRFHPTEEELLDFYLKNMVIGKKLRYDVIGFLNIYHHDPCDLPGLSKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYEGRAPRGSKTDWVMNEYRLPDNSPLPKDIVLCKIYRKATSLKVLEQRAAEEEEMKQMVVGSPTSPPSSTDTISFNYTQQDQHVPIPLLFQQVIPKKESQHEIEPKTKTETHNMVSEAIMTEKPCYEKTITQMKDNNNKKACGTSLQLPLGKDNVPELQLPMVTDWTQDTFWTQLNSPWLQNWTAYSNILNF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03134 312 ProSiteProfiles NAC domain profile. 12 158 IPR003441 GO:0003677|GO:0006355
Vivi5g03134 312 Pfam No apical meristem (NAM) protein 14 140 IPR003441 GO:0003677|GO:0006355
Vivi5g03134 312 Gene3D NAC domain 21 162 IPR036093 GO:0003677|GO:0006355
Vivi5g03134 312 FunFam NAC domain-containing protein 67-like 21 162 - -
Vivi5g03134 312 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 229 - -
Vivi5g03134 312 SUPERFAMILY NAC domain 12 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03134 Vivi-Chr5 120474176 120476163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03134 9 309 NAC Transcription Factor Family AT2G17040 57.756 5.11e-112 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi5g03134 NAM 8.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03134 - - gmx:100816770 452.595