Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03132 ATGGCTTTCTTTCTCTACTTCTTCGTTCTCTTTCTCGCTTCTTCTGCTTCTGCTTGCGATCGTTGCTTACACCAATCTAAAGCTTCCTATTTCTCCAAAGCTTCTTCCCTTTCATCTGGAGCATGTGGTTATGGCTCTTTAGCACTTGACGTTAGTCATGGCCAGCTTGCCGCTGGCGTTTCTTCACTTTTCTCTAATGGAGCTGGTTGCGGTGCTTGTTTTCAGGTAAGATGCAAGAACCAAGCTATATGCACAAAAGAAGGTACAAAAGTGGTATTAACGGATCTAAACCACAACAATCAAACTGATTTTGTTCTAAGCAGTAGAGCTTTCACTGCCATGGCTCAAAAGGGTAAGAGCCAACAAATTTTGAAGCTTGGCATTGTTGACATTGAATATAAGAGAGTACCTTGTGACTATAAAAAACAGAATTTAGCTGTTCGTGTTGAAGAATCAAGCAAAATACCAGATTATTTAGCAATTAAATTTTTGTATCAAGGTGGCCAAACAGAGATAGTAGGTGCTGATGTAGCACAGGTTGGATCTTCTCAGTGGAATTTTTTGAGTAGAAACCATGGTGCAGTATGGGACACAAGTAGGGTTCCACAAGGGGCATTACAATTAAGGTTTGTGGTTACAGCAGGGTATGATGGAAAATGGATTTGGGCAAAGAAGGTTCTACCAGCTGATTGGAAAAATGGGGTGATATATGATACTGATGTTCAGATTACAGAAATTGCACTAGAGGGTTGCGGAACATGTGATGATGGAACATGGTGA 780 0.4077 MAFFLYFFVLFLASSASACDRCLHQSKASYFSKASSLSSGACGYGSLALDVSHGQLAAGVSSLFSNGAGCGACFQVRCKNQAICTKEGTKVVLTDLNHNNQTDFVLSSRAFTAMAQKGKSQQILKLGIVDIEYKRVPCDYKKQNLAVRVEESSKIPDYLAIKFLYQGGQTEIVGADVAQVGSSQWNFLSRNHGAVWDTSRVPQGALQLRFVVTAGYDGKWIWAKKVLPADWKNGVIYDTDVQITEIALEGCGTCDDGTW 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03132 259 Gene3D - 12 139 IPR036908 -
Vivi5g03132 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Vivi5g03132 259 Pfam Lytic transglycolase 57 133 IPR009009 -
Vivi5g03132 259 SUPERFAMILY PHL pollen allergen 144 238 IPR036749 -
Vivi5g03132 259 Gene3D - 140 244 IPR036749 -
Vivi5g03132 259 FunFam Expansin-like A2 140 244 - -
Vivi5g03132 259 Pfam Expansin C-terminal domain 146 228 IPR007117 -
Vivi5g03132 259 SMART dpbb_1 57 133 IPR007112 -
Vivi5g03132 259 SUPERFAMILY Barwin-like endoglucanases 8 141 IPR036908 -
Vivi5g03132 259 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Vivi5g03132 259 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Vivi5g03132 259 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Vivi5g03132 259 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Vivi5g03132 259 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Vivi5g03132 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Vivi5g03132 259 CDD DPBB_EXLA_N 14 140 - -
Vivi5g03132 259 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576|GO:0019953
Vivi5g03132 259 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Vivi5g03132 259 PRINTS Major pollen allergen Lol pI signature 58 69 IPR005795 GO:0005576|GO:0019953
Vivi5g03132 259 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Vivi5g03132 259 PANTHER EXPANSIN-B3 12 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03132 Vivi-Chr5 120384676 120386453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03132 1 254 Expansin Gene Family AT3G45960 63.566 5.51e-109 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03132 - - gmx:100305884 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03132 5 120384676 120386453 Vivi5g03132 5 120384676 120386453 ECH