Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03120 ATGGAAGCTATCTTCGTTACCAAACCAATTTCTCACTTCAAACCCAAACACTCTCTACCTCCCAAAAACCCATTTCTCTCCCACCACCAATCTCTCCCTTTCCGCCACAAACCCACCCACTTCCCCACCATAACTGCCGCAATTCAAAACCAACAACAAGAACAACAGGAAACTACTCCCAAAGAATTCGAAGATGAATCCTACGGCGAAGTCAAGAAAATCATCGGAAGCAAAGCACTGGAAGACTCCACCGGTATGGAGTATCTCATAGAATGGAAAGACGGACACGAACCCTCCTGGGTTCCCGCCGACTATATAGCAAAAGACGTTCTCTCCGAATACGAAACCCCCTGGTGGACCGCAGCAAGAAAGGCCAACGAAGCCGAAATCAGAACAATCCTCGAAGCCGACGACGGGCGTGACGTGAATGCCGTGGACGCCGACGGGAGAACCGCGCTTCTCTTCGTGGCGGGACTCGGCTCGGAGCCATGCGTTAAGCTTCTAGCGGAAGCCGGCGCGAATCTCGACCATCAAGACAATCGCGGCGGCTTATCCGCGCTTCACATGGCAGCCGGATACGTAAGACCAGGAGTCGCGAAGCTGCTTCTGGACCTCGGCGCGGAACCCGAAATCAGCGACGATCGAGGGAGAACTGCGTTGGAGCTAGCAAGGGAGTTGTTGAAAGCGACGCCGAAGGGGAATCCGATGCAATTCGGGCGGAGAATGGGGTTAGAAGGAGTGGTTAGGGTTTTGGAAGGAGCGGTGTTTGAGTATTCTGAGGTGGAGGAGATTATGGAGAAGAGAGGGAAGGGTGAGAATTTGGAGTATTTGGTTCGATGGAAAGATGAAAGTGCGAACGAGTGGGTGAAAGCGAGGTATGTGGCGGAGGATTTGGTGAAGGATTATGAGGCTGGGCTTGAGTATGCGGTGGCGGAAGCGGTGGTTGGTCGGAGACTTGGGGATGATGGGAAGTATGAGTGTTTGGTGAAATGGGTTGATTTGGAAGAGCCCAGTTGGGAGCCTGAGGAGAATGTTGATTCGGAGCTTGTTAAGATGTTTGAAGTGAATAATAGTCAAGCCCGGCCCAGTGATGATAATGGGCTTTCTACACCTGGTTTGAGTCAGGATGGCCCAACTATTGCTAGTGCTTGA 1152 0.5208 MEAIFVTKPISHFKPKHSLPPKNPFLSHHQSLPFRHKPTHFPTITAAIQNQQQEQQETTPKEFEDESYGEVKKIIGSKALEDSTGMEYLIEWKDGHEPSWVPADYIAKDVLSEYETPWWTAARKANEAEIRTILEADDGRDVNAVDADGRTALLFVAGLGSEPCVKLLAEAGANLDHQDNRGGLSALHMAAGYVRPGVAKLLLDLGAEPEISDDRGRTALELARELLKATPKGNPMQFGRRMGLEGVVRVLEGAVFEYSEVEEIMEKRGKGENLEYLVRWKDESANEWVKARYVAEDLVKDYEAGLEYAVAEAVVGRRLGDDGKYECLVKWVDLEEPSWEPEENVDSELVKMFEVNNSQARPSDDNGLSTPGLSQDGPTIASA 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03120 383 SUPERFAMILY Chromo domain-like 257 305 IPR016197 -
Vivi5g03120 383 Gene3D - 113 254 IPR036770 -
Vivi5g03120 383 ProSiteProfiles Ankyrin repeat region circular profile. 182 214 - -
Vivi5g03120 383 SMART ANK_2a 113 144 IPR002110 GO:0005515
Vivi5g03120 383 SMART ANK_2a 148 177 IPR002110 GO:0005515
Vivi5g03120 383 SMART ANK_2a 182 211 IPR002110 GO:0005515
Vivi5g03120 383 ProSiteProfiles Chromo and chromo shadow domain profile. 259 288 IPR000953 -
Vivi5g03120 383 CDD CD3_cpSRP43_like 306 355 IPR030300 -
Vivi5g03120 383 MobiDBLite consensus disorder prediction 355 383 - -
Vivi5g03120 383 SUPERFAMILY Chromo domain-like 64 118 IPR016197 -
Vivi5g03120 383 ProSiteProfiles Ankyrin repeat profile. 148 180 IPR002110 GO:0005515
Vivi5g03120 383 ProSiteProfiles Chromo and chromo shadow domain profile. 309 345 IPR000953 -
Vivi5g03120 383 Gene3D - 305 356 - -
Vivi5g03120 383 PANTHER MYOTROPHIN 67 280 - -
Vivi5g03120 383 SMART chromo_7 308 358 IPR000953 -
Vivi5g03120 383 SMART chromo_7 67 119 IPR000953 -
Vivi5g03120 383 SMART chromo_7 257 307 IPR000953 -
Vivi5g03120 383 ProSiteProfiles Ankyrin repeat region circular profile. 148 180 - -
Vivi5g03120 383 Gene3D - 255 304 - -
Vivi5g03120 383 Gene3D - 65 112 - -
Vivi5g03120 383 SUPERFAMILY Ankyrin repeat 113 225 IPR036770 -
Vivi5g03120 383 ProSiteProfiles Ankyrin repeat profile. 182 214 IPR002110 GO:0005515
Vivi5g03120 383 SUPERFAMILY Chromo domain-like 311 353 IPR016197 -
Vivi5g03120 383 Pfam Ankyrin repeats (many copies) 168 223 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03120 136 223 CAMTA Transcription Factor Family AT5G09410 36.170 2.99e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03120 K12271 - gmx:100818382 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03120 5 120019936 120021280 Vivi5g03120 5 120019936 120021280 ECH