Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03078 ATGGAGTGTACACCTGCTAGAAAGACACAGAAAGCTGACCGAGAAAAGTTAAGGAGGGATCGACTCAATGAACAGTTTGTAGAACTTGGTAGCATTTTAGACCCTGATAGACCCAAAAATGATAAAGCAACCATTCTAGGTGATACGGTTCAATTGCTGAAGGACCTTACTTCTCAAGTTAGTAAACTAAAAGATGAATATACTATGCTAAATGAAGAATCTCGTGAGTTGTCTCAGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCAGATATTGAGAATTTGAATAACCAATATCAGCTGCAACTCAGGACTATGTATCCATGGCCTGCAATGGATCATTCAGTAATGATGGCTCCACCATCATATCCGTATCCAGTTCCAATGCCGGTGCCTCCTCCTGGTTCAATTCCCATGCAGCCGTACCCCTACTATGCTAACCAACATCCTGCAATCATCCCTAACCCGTGCTCGACATATGTCCCGTTTTTAGCTCCCAACACAATTGTTGAACAGCAATCCACACAGTACGTATCCCCGCCTCTTCATCCAGGTAGCCGGTCCCACATATCAGGAAAACAAGAATCCAAAAACAAATCATCGAGGGAGAGCAGAGCTGAAAGACATGCAGATTCTAATGATGTCGCCACAGACCTTGAGTTGAAGACTCCTGGGTCTTCTGCAGATCAGGATTTATCATCCGCACAGAAAAAATCCAGCAAGTCTCCTTCAAGGAAGGAAAACAGTTACACAGATGGTAGTTCCTTAGGCAAGTGTTCTTCATCTCACAGTGTTCAGGATAGCTCATCAAGTAGTGTAGTTGGGAGCAGAAAAGCTAGTGAATGA 855 0.4316 MECTPARKTQKADREKLRRDRLNEQFVELGSILDPDRPKNDKATILGDTVQLLKDLTSQVSKLKDEYTMLNEESRELSQEKNDLREEKASLKSDIENLNNQYQLQLRTMYPWPAMDHSVMMAPPSYPYPVPMPVPPPGSIPMQPYPYYANQHPAIIPNPCSTYVPFLAPNTIVEQQSTQYVSPPLHPGSRSHISGKQESKNKSSRESRAERHADSNDVATDLELKTPGSSADQDLSSAQKKSSKSPSRKENSYTDGSSLGKCSSSHSVQDSSSSSVVGSRKASE 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03078 284 Gene3D - 6 89 IPR036638 GO:0046983
Vivi5g03078 284 CDD bHLH_AtILR3_like 11 85 - -
Vivi5g03078 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Vivi5g03078 284 PANTHER TRANSCRIPTION FACTOR BHLH121 2 282 IPR044579 GO:0003700|GO:0006879
Vivi5g03078 284 MobiDBLite consensus disorder prediction 178 284 - -
Vivi5g03078 284 MobiDBLite consensus disorder prediction 222 242 - -
Vivi5g03078 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 76 IPR036638 GO:0046983
Vivi5g03078 284 MobiDBLite consensus disorder prediction 249 284 - -
Vivi5g03078 284 Coils Coil 53 108 - -
Vivi5g03078 284 SMART finulus 12 62 IPR011598 GO:0046983
Vivi5g03078 284 MobiDBLite consensus disorder prediction 193 219 - -
Vivi5g03078 284 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03078 Vivi-Chr5 119227527 119229925 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03078 6 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 64.957 1.09e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi5g03078 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03078 - - cam:101491902 416.772